Name: Spirochaeta psychrophila MO-SPC1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130687

Type strain:

Species: Spirochaeta psychrophila

Strain Designation: MO-SPC1

Culture col. no.: DSM 23951, JCM 17280

Strain history: M. Miyazaki MO-SPC1.

NCBI tax ID(s): 913100 (species)

SI-ID 398966

DSM 23951

Section

Spirochaeta psychrophila MO-SPC1 is an anaerobe, psychrophilic bacterium that was isolated from marine subsurface sediment, 1180 m water depth.

anaerobe
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Spirochaetaceae*
	Genus	*Spirochaeta*
	Species	**Spirochaeta psychrophila**
	Full Scientific Name (LPSN)	Spirochaeta psychrophila Miyazaki et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #21797]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21797]

Culture medium

PLEOMORPHOCHAETA MEDIUM (DSMZ Medium 1271)

[Ref.: #21797]

Culture medium growth

[Ref.: #21797]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21797]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21797]			growth	15 °C
[Ref.: #67770]			growth	15 °C

[Ref.: #21797]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21797]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21797]	Sample type/isolated from	marine subsurface sediment, 1180 m water depth
[Ref.: #21797]	Geographic location (country and/or sea, region)	north-west Pacific Ocean offshore Shimokita Peninsula (site C9001)
[Ref.: #21797]	Country	Japan
[Ref.: #21797]	Country ISO 3 Code	JPN
[Ref.: #21797]	Continent	Asia
[Ref.: #21797]	Geographic location	41.1773°/142.2010°

[Ref.: #67770]	Sample type/isolated from	Marine subsurface sediments collected off the Shimokita Peninsula of Japan
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB598279 (>99% sequence identity) for Spirochaeta psychrophila subclade from Microbeatlas

Aquatic Samples	3832
Soil Samples	72
Animal Samples	38
Plant Samples	99
Total Samples	4041

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21797]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21797]	Spirochaeta psychrophila gene for 16S rRNA, partial sequence	AB598279	1464	ENA	913100 tax ID

[Ref.: #21797]

GC-content

39.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21797]

Culture collection no.

DSM 23951, JCM 17280

[Ref.: #89194]

SI-ID 398966

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spirochaeta psychrophila sp. nov., a psychrophilic spirochaete isolated from subseafloor sediment, and emended description of the genus Spirochaeta.	Miyazaki M, Sakai S, Yamanaka Y, Saito Y, Takai K, Imachi H	Int J Syst Evol Microbiol	10.1099/ijs.0.062463-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21797

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23951

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89194

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398966.1 )

* These data were automatically processed and therefore are not curated

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