Sphingorhabdus arenilitoris (DSM 100569, CECT 8531, KCTC 42051)

Name: Sphingorhabdus arenilitoris (DSM 100569, CECT 8531, KCTC 42051)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130686

Type strain

Strain Designation GJR-7

Culture col. no. DSM 100569 CECT 8531 KCTC 42051 GJR-7

NCBI tax ID(s) 1490041

Special Collections DSMZ KCTC

History <- KCTC <- J.-M. Park and colleagues, Department of Food Science and Biotechnology, Sungkyunkwan University, Suwon; GJR-7 <- JH Yoon, Sungkyunkwan Univ.

Links

Sphingorhabdus arenilitoris GJR-7 is an aerobe bacterium that was isolated from coastal sand.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405720

KCTC 42051,CECT 8531,DSM 100569

@ref 20215

Last LPSN update 2026-02-09 11:31:17

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingorhabdus

Species Sphingorhabdus arenilitoris

Full scientific name Sphingorhabdus arenilitoris Park et al. 2014

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22095	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22095	positive	growth	28
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
22095	-	-	-	-	-	+	-	+	+	-	-	-	-	+	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22095	coastal sand	Geoje Island, South Sea	Republic of Korea	KOR	Asia
67771	From coastal sand of the South Sea of South Korea		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KJ452169 (>99% sequence identity) for Sphingorhabdus arenilitoris subclade from Microbeatlas

Aquatic Samples	459
Soil Samples	88
Animal Samples	53
Plant Samples	12
Total Samples	612

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22095	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265148v1 assembly for Sphingorhabdus arenilitoris CECT 8531	contig	GCA_042651485	1490041	72.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22095	Sphingorhabdus arenilitoris strain GJR-7 16S ribosomal RNA gene, partial sequence	KJ452169	1424		1490041
124043	Sphingorhabdus arenilitoris strain CECT 8531 16S ribosomal RNA gene, partial sequence.	MT760301	1333		1490041

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingorhabdus arenilitoris sp. nov., isolated from a coastal sand, and reclassification of Sphingopyxis rigui as Sphingorhabdus rigui comb. nov. and Sphingopyxis wooponensis as Sphingorhabdus wooponensis comb. nov.	Park JM, Park S, Jung YT, Kim H, Lee JS, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.064378-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22095	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100569
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Sphingorhabdus arenilitoris (DSM 100569, CECT 8531, KCTC 42051)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042651485

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media