Name: Psychrobium conchae BJ-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130660

Type strain:

Species: Psychrobium conchae

Strain Designation: BJ-1

Culture col. no.: DSM 28701, JCM 30103

Strain history: H. Hirayama BJ-1.

NCBI tax ID(s): 1491831 (species)

SI-ID 399880

DSM 28701

Section

Psychrobium conchae BJ-1 is a psychrophilic bacterium that was isolated from gill tissue of a deep-sea hydrothermal vent mussel Bathymodiolus japonicus.

psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Psychrobium*
	Species	**Psychrobium conchae**
	Full Scientific Name (LPSN)	Psychrobium conchae Nogi et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22126]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #22126]

Culture medium growth

[Ref.: #22126]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22126]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22126]			growth	12 °C
[Ref.: #67770]			growth	12 °C

[Ref.: #22126]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22126]	Sample type/isolated from	gill tissue of a deep-sea hydrothermal vent mussel Bathymodiolus japonicus
[Ref.: #22126]	Host species	Bathymodiolus japonicus
[Ref.: #22126]	Geographic location (country and/or sea, region)	Okinawa Trough, Iheya North hydrothermal field (27° 47.438' N 126° 53.736' E; at a depth of 990 m)
[Ref.: #22126]	Country	Japan
[Ref.: #22126]	Country ISO 3 Code	JPN
[Ref.: #22126]	Continent	Asia
[Ref.: #22126]	Geographic location	27.7906°/126.8960°

[Ref.: #67770]	Sample type/isolated from	Gill tissue of the deep-sea hydrothermal vent mussel Bathymodiolus japonicus collected at the Iheya North hydrothermal field in the Okinawa Trough, off Japan (27° 47.438' N 126° 53.736' E; at a depth of 990 m)
[Ref.: #67770]	Host species	Bathymodiolus japonicus
[Ref.: #67770]	Geographic location	27.7906°/126.8960°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Organ	#Vascular system
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB930131 (>99% sequence identity) for Psychrobium conchae subclade from Microbeatlas

Aquatic Samples	289
Soil Samples	1
Animal Samples	18
Plant Samples	1
Total Samples	309

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22126]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22126]	Psychrobium conchae gene for 16S ribosomal RNA, partial sequence	AB930131	1469	ENA	1491831 tax ID

[Ref.: #22126]

GC-content

40.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #22126]

Culture collection no.

DSM 28701, JCM 30103

[Ref.: #89170]

SI-ID 399880

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobium conchae gen. nov., sp. nov., a psychrophilic marine bacterium isolated from the Iheya North hydrothermal field.	Nogi Y, Abe M, Kawagucci S, Hirayama H	Int J Syst Evol Microbiol	10.1099/ijs.0.066738-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22126

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28701

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89170

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399880.1 )

* These data were automatically processed and therefore are not curated

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