Name: Alistipes senegalensis JC50
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130658

Type strain:

Species: Alistipes senegalensis

Strain Designation: JC50

Culture col. no.: DSM 25460, CSUR P150, JCM 32779, CSUR P156

Strain history: DSM 25460 <-- J.-C. Lagier; Timone Hosp., France; JC50.

NCBI tax ID(s): 1288121 (species)

Section

Alistipes senegalensis JC50 is an anaerobe, mesophilic bacterium that was isolated from stool from a healthy 16-year-old male Senegalese volunteer patient.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Rikenellaceae*
	Genus	*Alistipes*
	Species	"Alistipes senegalensis"
	Full Scientific Name (LPSN)	Alistipes senegalensis Mishra et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #21468]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21468]

Culture medium

FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)

[Ref.: #21468]

Culture medium growth

[Ref.: #21468]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21468]

Culture medium composition

expand / minimize

[Ref.: #21468]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #21468]

Culture medium growth

[Ref.: #21468]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21468]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21468]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #21468]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21468]

Oxygen tolerance

anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #21468]	13298	-	-	+	+	-	-	+	-	+/-	+/-	-	-	+	-	-	-	-	-	-	+	+/-	-	-	+/-	+	+/-	-	+	-
[Ref.: #21468]	12452	-	-	+	+	-	-	+	-	+	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	+	-	-	+/-	-
[Ref.: #21468]	12451	-	-	+	+	-	-	+	-	-	-	+/-	+/-	-	+/-	-	-	+/-	-	-	+	-	-	-	-	+	-	-	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21468]	Sample type/isolated from	stool from a healthy 16-year-old male Senegalese volunteer patient
[Ref.: #21468]	Country	Senegal
[Ref.: #21468]	Country ISO 3 Code	SEN
[Ref.: #21468]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Fecal flora of a healthy patient in Senegal
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF824804 (>99% sequence identity) for Alistipes senegalensis subclade from Microbeatlas

Aquatic Samples	96
Soil Samples	54
Animal Samples	10208
Plant Samples	7
Total Samples	10365

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21468]	HIV-1 isolate Primer ID CGGCGGTG_T3_21 from USA protease (pol) gene, partial cds	JN824804	297	ENA	11676 tax ID
[Ref.: #67770]	Alistipes senegalensis JC50 16S ribosomal RNA gene, partial sequence	JF824804	1480	ENA	1033732 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alistipes senegalensis JC50	GCA_000312145	scaffold	GenBank	1033732 tax ID
[Ref.: #66792]	Alistipes senegalensis JC50	1033732.3	wgs	PATRIC	1033732 tax ID	*
[Ref.: #66792]	Alistipes senegalensis JC50	2547132124	draft	JGI IMG/M	1033732 tax ID	*
[Ref.: #66792]	Alistipes senegalensis JC50	GCA_025145645	complete	GenBank	1033732 tax ID	*
[Ref.: #66792]	Alistipes senegalensis strain FDAARGOS_1578	1288121.43	complete	PATRIC	1288121 tax ID	*
[Ref.: #66792]	Alistipes senegalensis strain FDAARGOS_1578	1288121.42	complete	PATRIC	1288121 tax ID	*

[Ref.: #21468]	GC-content	58.40 mol%	sequence analysis
[Ref.: #67770]	GC-content	58.4 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alistipes senegalensis JC50 JC50 NCBI: GCA_025145645.1
[Ref.: #69480]	motile	no	92.309	no
[Ref.: #69480]	flagellated	no	96.913	no
[Ref.: #69480]	gram-positive	no	98.285	no
[Ref.: #69480]	anaerobic	yes	97.585	yes
[Ref.: #69480]	aerobic	no	97.074	yes
[Ref.: #69480]	halophile	no	87.451	no
[Ref.: #69480]	spore-forming	no	93.936	no
[Ref.: #69480]	glucose-ferment	yes	62.678	no
[Ref.: #69480]	thermophile	no	98.823	no
[Ref.: #69480]	glucose-util	yes	84.57	no

Availability in culture collections External links

[Ref.: #21468]

Culture collection no.

DSM 25460, CSUR P150, JCM 32779, CSUR P156

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21468

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25460

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Alistipes senegalensis JC50 JC50

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