Dechloromonas sp. (DSM 23276, A34)

Name: Dechloromonas sp. (DSM 23276, A34)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130650

Type strain

Strain Designation A34

Culture col. no. DSM 23276 A34

NCBI tax ID(s) 1917218

Special Collections DSMZ

Links

A34 is an aerobe, mesophilic prokaryote that was isolated from waste shale rock within phosphate mine overburden.

aerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 405648

DSM 23276

@ref 20215

Last LPSN update 2025-12-16 10:01:03

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Azonexaceae

Genus Dechloromonas

Full scientific name Dechloromonas Achenbach et al. 2001

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.6
125438	negative	98

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
21569	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
21569	MEDIUM FOR CHLORATE RESPIRERS (DSMZ Medium 908)	Medium recipe at MediaDive	Name: MEDIUM FOR CHLORATE RESPIRERS (DSMZ Medium 908) Composition: NaHCO3 2.43665 g/l Na-acetate 1.32554 g/l NaClO3 0.974659 g/l NaH2PO4 0.584795 g/l NH4Cl 0.243665 g/l KCl 0.0974659 g/l MgSO4 0.0292398 g/l CaCl2 x 2 H2O 0.00974659 g/l HCl 0.00243665 g/l FeCl2 x 4 H2O 0.00146199 g/l alpha-lipoic acid 0.000243665 g/l p-Aminobenzoic acid 0.000243665 g/l Na2MoO4 0.000243665 g/l Thiamine-HCl x 2 H2O 0.000243665 g/l Na2WO4 x 2 H2O 0.000243665 g/l Vitamin B12 0.000243665 g/l Riboflavin 0.000243665 g/l Pantothenic acid 0.000243665 g/l CoCl2 x 6 H2O 0.000185185 g/l Nicotine amide 0.000121832 g/l Nicotinic acid 0.000121832 g/l Folic acid 9.74659e-05 g/l Biotin 9.74659e-05 g/l MnCl2 x 4 H2O 9.74659e-05 g/l ZnCl2 6.82261e-05 g/l Pyridoxamine hydrochloride 4.87329e-05 g/l Na2MoO4 x 2 H2O 3.50877e-05 g/l NiCl2 x 6 H2O 2.33918e-05 g/l H3BO3 5.84795e-06 g/l CuCl2 x 2 H2O 1.94932e-06 g/l Distilled water
21569	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
21569	THAUERA AROMATICA MEDIUM (DSMZ Medium 586)	Medium recipe at MediaDive	Name: THAUERA AROMATICA MEDIUM (DSMZ Medium 586) Composition: K2HPO4 5.83251 g/l KNO3 1.97044 g/l KH2PO4 0.803941 g/l Na-benzoate 0.70936 g/l NH4Cl 0.522168 g/l MgSO4 x 7 H2O 0.197044 g/l CaCl2 x 2 H2O 0.0246305 g/l HCl 0.0246305 g/l FeCl2 x 4 H2O 0.0147783 g/l CoCl2 x 6 H2O 0.00187192 g/l MnCl2 x 4 H2O 0.000985222 g/l ZnCl2 0.000689655 g/l Na2MoO4 x 2 H2O 0.00035468 g/l p-Aminobenzoic acid 0.000246305 g/l alpha-lipoic acid 0.000246305 g/l Riboflavin 0.000246305 g/l Pantothenic acid 0.000246305 g/l Vitamin B12 0.000246305 g/l Thiamine-HCl x 2 H2O 0.000246305 g/l NiCl2 x 6 H2O 0.000236453 g/l Nicotine amide 0.000123153 g/l Nicotinic acid 0.000123153 g/l Folic acid 9.85222e-05 g/l Biotin 9.85222e-05 g/l H3BO3 5.91133e-05 g/l Pyridoxamine hydrochloride 4.92611e-05 g/l CuCl2 x 2 H2O 1.97044e-05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21569	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
21569	aerobe
21569	anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		98.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Engineered	#Waste	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21569	waste shale rock within phosphate mine overburden	Southeastern Idaho	USA	USA	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2626160v1 assembly for Dechloromonas sp. A34	complete	GCA_026261605	447588.3	447588	90.92

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Dechloromonas sp. A34
NCBI: GCA_026261605

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.60	no
125439	motility	BacteriaNetⓘ	yes	84.60	no
125439	gram_stain	BacteriaNetⓘ	negative	97.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	80.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Dechloromonas sp. A34 A34
NCBI: GCA_026261605.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	85.44	no
125438	aerobic	aerobicⓘ	no	51.93	no
125438	spore-forming	spore-formingⓘ	no	88.72	no
125438	thermophilic	thermophileⓘ	no	96.41	no
125438	flagellated	motile2+ⓘ	yes	85.92	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21569	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23276
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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