Name: Allgaiera indica 20V17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130646

Type strain:

Species: Allgaiera indica

Strain Designation: 20V17

Culture col. no.: DSM 24802, CGMCC 1.10859, JCM 17871, MCCC 1A01802

Strain history: J. Jiang 20V17.

NCBI tax ID(s): 765699 (species)

SI-ID 408247

DSM 24802

Section

Allgaiera indica 20V17 is a mesophilic, Gram-negative bacterium that was isolated from sulfide chimney of a deep-sea hydrothermal vent.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Allgaiera*
	Species	**Allgaiera indica**
	Full Scientific Name (LPSN)	Allgaiera indica (Jiang et al. 2014) Hördt et al. 2020

	Synonym	Acidimangrovimonas indica
	Synonym	Defluviimonas indica

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #22088]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22088]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #22088]

Culture medium growth

[Ref.: #22088]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22088]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22088]			growth	28 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #22088]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.993

[Ref.: #67770]

Observation

quinones: Q10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22088]	Sample type/isolated from	sulfide chimney of a deep-sea hydrothermal vent
[Ref.: #22088]	Geographic location (country and/or sea, region)	Southwest Indian Ridge (37.78° S 50.64° E at a depth of 2783 m)
[Ref.: #22088]	Country	China
[Ref.: #22088]	Country ISO 3 Code	CHN
[Ref.: #22088]	Continent	Asia
[Ref.: #22088]	Geographic location	-37.7800°/50.6400°

[Ref.: #67770]	Sample type/isolated from	Deep-sea hydrothermal sulfide in the South-west Indian Ridge
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Sulfuric	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM050420 (>99% sequence identity) for Allgaiera indica subclade from Microbeatlas

Aquatic Samples	1135
Soil Samples	105
Animal Samples	139
Plant Samples	57
Total Samples	1436

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22088]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22088]	Defluviimonas indica strain 20V17 16S ribosomal RNA gene, partial sequence	HM050420	1431	ENA	765699 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Defluviimonas sp. 20V17	GCA_000687435	contig	GenBank	1417296 tax ID
[Ref.: #67770]	Allgaiera indica DSM 24802	GCA_900106675	scaffold	GenBank	765699 tax ID
[Ref.: #66792]	Allgaiera indica CGMCC 1.10859	GCA_014653075	contig	GenBank	765699 tax ID	*
[Ref.: #66792]	Acidimangrovimonas indica strain CGMCC 1.10859	765699.5	wgs	PATRIC	765699 tax ID	*
[Ref.: #66792]	Defluviimonas indica strain DSM 24802	765699.3	wgs	PATRIC	765699 tax ID	*
[Ref.: #66792]	Allgaiera indica DSM 24802	2693429897	draft	JGI IMG/M	765699 tax ID	*

[Ref.: #22088]	GC-content	66.3 mol%	sequence analysis
[Ref.: #67770]	GC-content	66.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Allgaiera indica DSM 24802 NCBI: GCA_900106675.1
[Ref.: #69481]	spore-forming	no	81	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidimangrovimonas indica strain CGMCC 1.10859 PATRIC: 765699.5
[Ref.: #69480]	motile	yes	51.166	no
[Ref.: #69480]	flagellated	no	80.3	no
[Ref.: #69480]	gram-positive	no	98.216	no
[Ref.: #69480]	anaerobic	no	94.747	no
[Ref.: #69480]	halophile	no	59.369	no
[Ref.: #69480]	spore-forming	no	94.366	no
[Ref.: #69480]	glucose-util	yes	75.533	no
[Ref.: #69480]	aerobic	yes	76.503	no
[Ref.: #69480]	thermophile	no	92.107	yes
[Ref.: #69480]	glucose-ferment	no	90.411	no

Availability in culture collections External links

[Ref.: #22088]

Culture collection no.

DSM 24802, CGMCC 1.10859, JCM 17871, MCCC 1A01802

[Ref.: #89157]

SI-ID 408247

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Defluviimonas nitratireducens sp. nov., isolated from surface seawater.	Liu Y, Lai Q, Wang W, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002015	2017	*
Phylogeny	Defluviimonas indica sp. nov., a marine bacterium isolated from a deep-sea hydrothermal vent environment.	Jiang L, Xu H, Shao Z, Long M	Int J Syst Evol Microbiol	10.1099/ijs.0.061614-0	2014	*
Phylogeny	Acidimangrovimonas sediminis gen. nov., sp. nov., isolated from mangrove sediment and reclassification of Defluviimonas indica as Acidimangrovimonas indica comb. nov. and Defluviimonas pyrenivorans as Acidimangrovimonas pyrenivorans comb. nov.	Ren H, Ma H, Li H, Huang L, Luo Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003513	2019	*
Phylogeny	Defluviimonas pyrenivorans sp. nov., a novel bacterium capable of degrading polycyclic aromatic hydrocarbons.	Zhang S, Sun C, Xie J, Wei H, Hu Z, Wang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002629	2018	*
Genetics	Draft Genome Sequence of Defluviimonas indica Strain 20V17T, Isolated from a Deep-Sea Hydrothermal Vent Environment in the Southwest Indian Ocean.	Jiang L, Long M, Shao Z	Genome Announc	10.1128/genomeA.00479-14	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22088

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24802

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89157

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408247.1 )

* These data were automatically processed and therefore are not curated

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Allgaiera indica DSM 24802

Acidimangrovimonas indica strain CGMCC 1.10859

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