Name: Jannaschia faecimaris HD-22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130605

Type strain:

Species: Jannaschia faecimaris

Strain Designation: HD-22

Culture col. no.: DSM 100420, CCUG 63415, KCTC 32179

Strain history: <- KCTC <- J. H. Yoon; HD-22

NCBI tax ID(s): 1244108 (species)

SI-ID 403547

DSM 100420, CCUG 63415

Section

Jannaschia faecimaris HD-22 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from a tidal flat sediment.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Jannaschia*
	Species	**Jannaschia faecimaris**
	Full Scientific Name (LPSN)	Jannaschia faecimaris Jung and Yoon 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #69480]	Motility	no Confidence in %90.482

[Ref.: #21608]	Incubation period	3-7 days

[Ref.: #62978]	Incubation period	7-14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21608]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21608]

Culture medium growth

[Ref.: #21608]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21608]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21608]			growth	25 °C
[Ref.: #62978]			growth	30 °C

[Ref.: #21608]	Temperature range	mesophilic
[Ref.: #62978]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62978]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #21608]	catalase	+	1.11.1.6
[Ref.: #21608]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21608]	24155	-	-	-	-	-	+	-	+	+	-	-	+	-	+/-	+/-	-	-	+	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21608]	Sample type/isolated from	a tidal flat sediment
[Ref.: #21608]	Geographic location (country and/or sea, region)	Hwang-do
[Ref.: #21608]	Country	Republic of Korea
[Ref.: #21608]	Country ISO 3 Code	KOR
[Ref.: #21608]	Continent	Asia

[Ref.: #62978]	Sample type/isolated from	Sediment,Yellow sea
[Ref.: #62978]	Sampling date	2007
[Ref.: #62978]	Geographic location (country and/or sea, region)	Hwang-do peninsula
[Ref.: #62978]	Country	Republic of Korea
[Ref.: #62978]	Country ISO 3 Code	KOR
[Ref.: #62978]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX680802 (>99% sequence identity) for Jannaschia faecimaris from Microbeatlas

Aquatic Samples	343
Soil Samples	16
Animal Samples	15
Plant Samples
Total Samples	374

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21608]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21608]	Jannaschia faecimaris strain HD-22 from South Korea 16S ribosomal RNA gene, partial sequence	JX680802	1422	ENA	1244108 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Jannaschia faecimaris DSM 100420	GCA_900107415	contig	GenBank	1244108 tax ID	*
[Ref.: #66792]	Jannaschia faecimaris strain DSM 100420	1244108.3	wgs	PATRIC	1244108 tax ID	*
[Ref.: #66792]	Jannaschia faecimaris DSM 100420	2693429889	draft	JGI IMG/M	1244108 tax ID	*

[Ref.: #21608]

GC-content

64.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Jannaschia faecimaris strain DSM 100420 PATRIC: 1244108.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Jannaschia faecimaris strain DSM 100420 PATRIC: 1244108.3
[Ref.: #69480]	motile	no	56.563	no
[Ref.: #69480]	gram-positive	no	98.359	no
[Ref.: #69480]	anaerobic	no	97.772	yes
[Ref.: #69480]	aerobic	yes	88.671	no
[Ref.: #69480]	halophile	yes	68.389	no
[Ref.: #69480]	spore-forming	no	96.083	no
[Ref.: #69480]	glucose-util	yes	81.483	yes
[Ref.: #69480]	flagellated	no	85.023	no
[Ref.: #69480]	glucose-ferment	no	89.442	yes
[Ref.: #69480]	thermophile	no	96.596	no

Availability in culture collections External links

[Ref.: #21608]

Culture collection no.

DSM 100420, CCUG 63415, KCTC 32179

[Ref.: #89119]

SI-ID 403547

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jannaschia marina sp. nov., isolated from the gut of a gastropod, Onchidium reevesii.	Chen S, He M, Lai Q, Xu Y, Shang C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004756	2021	*
Phylogeny	Jannaschia faecimaris sp. nov., isolated from a tidal flat sediment.	Jung YT, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.057984-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21608

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100420

#62978 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63415

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89119

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403547.1 )

* These data were automatically processed and therefore are not curated

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Jannaschia faecimaris strain DSM 100420

Jannaschia faecimaris strain DSM 100420

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