Name: Allorhizobium taibaishanense DSM 100021
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130597

Type strain:

Species: Allorhizobium taibaishanense

Culture col. no.: DSM 100021, ACCC 14971, HAMBI 3214, CCNWSX 0483

Strain history: <- HAMBI <- G. H. Wei, College of Life Sciences, Shaanxi, China; CCNWSX 0483

NCBI tax ID(s): 1368428 (strain), 887144 (species)

SI-ID 379268

HAMBI 3214, LMG 27055

Section

Allorhizobium taibaishanense DSM 100021 is a mesophilic bacterium that was isolated from root nodule of Kummerowia striata.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Allorhizobium*
	Species	**Allorhizobium taibaishanense**
	Full Scientific Name (LPSN)	Allorhizobium taibaishanense (Yao et al. 2012) Hördt et al. 2020

	Synonym	"Allorhizobium* taibaishanense"*
	Synonym	Rhizobium taibaishanense

Information on morphological and physiological properties Morphology

[Ref.: #21929]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21929]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #21929]

Culture medium growth

[Ref.: #21929]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21929]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21929]			growth	30 °C
[Ref.: #30075]			growth	4-40 °C

[Ref.: #21929]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30075]			growth	12

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30075]		NaCl		growth	1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30075]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #30075]	fructose ChEBI	+	carbon source
[Ref.: #30075]	galactose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #30075]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #30075]	lactose ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #30075]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #30075]	mannose ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #30075]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #30075]	raffinose ChEBI	+	carbon source
[Ref.: #30075]	rhamnose ChEBI	+	carbon source
[Ref.: #30075]	ribose ChEBI	+	carbon source
[Ref.: #30075]	sodium citrate ChEBI	+	carbon source
[Ref.: #30075]	sucrose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #30075]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #21929]	catalase	+	1.11.1.6
[Ref.: #30075]	catalase	+	1.11.1.6
[Ref.: #30075]	cytochrome oxidase	+	1.9.3.1
[Ref.: #21929]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #30075]	gelatinase	+
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21929]	24144	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	+/-	+	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21929]	Sample type/isolated from	root nodule of Kummerowia striata
[Ref.: #21929]	Host species	Kummerowia striata
[Ref.: #21929]	Geographic location (country and/or sea, region)	Taibaishan Mountains, Shaanxi Province
[Ref.: #21929]	Country	China
[Ref.: #21929]	Country ISO 3 Code	CHN
[Ref.: #21929]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM776997 (>99% sequence identity) for Agrobacterium vitis from Microbeatlas

Aquatic Samples	3235
Soil Samples	3438
Animal Samples	2289
Plant Samples	1267
Total Samples	10229

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21929]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21929]	Rhizobium taibaishanense strain CCNWSX 0483 16S ribosomal RNA gene, partial sequence	HM776997	1324	ENA	1368428 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Allorhizobium taibaishanense DSM 100021	GCA_014196735	contig	GenBank	887144 tax ID	*
[Ref.: #66792]	Rhizobium taibaishanense strain DSM 100021	887144.6	wgs	PATRIC	887144 tax ID	*
[Ref.: #66792]	Rhizobium taibaishanense DSM 100021	2829949180	draft	JGI IMG/M	887144 tax ID	*
[Ref.: #66792]	Rhizobium taibaishanense DSM 100021	2738541332	draft	JGI IMG/M	887144 tax ID	*

[Ref.: #30075]

GC-content

58 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhizobium taibaishanense strain DSM 100021 PATRIC: 887144.6
[Ref.: #69480]	motile	yes	86.929	no
[Ref.: #69480]	flagellated	no	71.995	no
[Ref.: #69480]	gram-positive	no	98.105	no
[Ref.: #69480]	anaerobic	no	98.921	no
[Ref.: #69480]	halophile	no	90.307	yes
[Ref.: #69480]	spore-forming	no	95.387	no
[Ref.: #69480]	thermophile	no	98.736	yes
[Ref.: #69480]	glucose-util	yes	94.239	no
[Ref.: #69480]	aerobic	yes	93.249	no
[Ref.: #69480]	glucose-ferment	no	88.315	yes

Availability in culture collections External links

[Ref.: #21929]

Culture collection no.

DSM 100021, ACCC 14971, HAMBI 3214, CCNWSX 0483

[Ref.: #89112]

SI-ID 379268

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizobium oryziradicis sp. nov., isolated from rice roots.	Zhao JJ, Zhang J, Sun L, Zhang RJ, Zhang CW, Yin HQ, Zhang XX	Int J Syst Evol Microbiol	10.1099/ijsem.0.001724	2017	*
Phylogeny	Rhizobium taibaishanense sp. nov., isolated from a root nodule of Kummerowia striata.	Yao LJ, Shen YY, Zhan JP, Xu W, Cui GL, Wei GH	Int J Syst Evol Microbiol	10.1099/ijs.0.029108-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21929

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100021

#30075

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26433 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89112

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379268.1 )

#26433

IJSEM 335 2012 ( DOI 10.1099/ijs.0.029108-0 , PubMed 21421926 )

* These data were automatically processed and therefore are not curated

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Rhizobium taibaishanense strain DSM 100021

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