Actinomycetospora rhizophila (DSM 46673, CGMCC 4.7134, NEAU-B-8)

Name: Actinomycetospora rhizophila (DSM 46673, CGMCC 4.7134, NEAU-B-8)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130593

Type strain

Strain Designation NEAU-B-8

Culture col. no. DSM 46673 CGMCC 4.7134 NEAU-B-8 JCM 31765

NCBI tax ID(s) 1416876

Special Collections DSMZ JCM

History DSMZ <- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-B-8 <- H. He JCM <-- CGMCC 4.7134 <-- C. Liu; Northeast Agric. Univ., China; NEAU-B-8.

Links

Actinomycetospora rhizophila NEAU-B-8 is a bacterium that was isolated from rhizosphere soil of a peace lily grown in a flowerpot.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397504

JCM 31765,DSM 46673

@ref 20215

Last LPSN update 2026-05-29 08:37:24

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Actinomycetospora

Species Actinomycetospora rhizophila

Full scientific name Actinomycetospora rhizophila He et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.748
125439		92.819

Multimedia

@ref:	22062
multimedia content:	DSM_46673.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46673.jpg
caption:	Medium 553 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22062	GPHF-MEDIUM (DSMZ Medium 553)		Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22062	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.41

Observation

67770

Observationquinones: MK-8(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22062	rhizosphere soil of a peace lily (Spathiphyllum kochii) grown in a flowerpot	Spathiphyllum kochii	Harbin, Heilongjiang Province (45° 45' N 126° 41' E)	China	CHN	Asia	45.75	126.683 45.75/126.683
67770	Rhizosphere soil of a peace lily (Spathi phyllum Kochii) from Heilongjiang Province	Spathi phyllum Kochii		China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KF600710 (>99% sequence identity) for Actinomycetospora rhizophila from Microbeatlas

Aquatic Samples	156
Soil Samples	719
Animal Samples	382
Plant Samples	133
Total Samples	1390

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22062	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265790v1 assembly for Actinomycetospora rhizophila CGMCC 4.7134	scaffold	GCA_042657905	1416876	68.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22062	Actinomycetospora rhizophila strain NEAU-B-8 16S ribosomal RNA gene, partial sequence	KF600710	1526		1416876

GC content

@ref	GC-content (mol%)	Method
22062	69.8
67770	69.5-70.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4265790v1 assembly for Actinomycetospora rhizophila CGMCC 4.7134
NCBI: GCA_042657905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.41	no
125439	motility	BacteriaNetⓘ	no	92.82	no
125439	gram_stain	BacteriaNetⓘ	positive	99.75	no
125439	spore_formation	BacteriaNetⓘ	yes	74.62	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomycetospora rhizophila sp. nov., an actinomycete isolated from rhizosphere soil of a peace lily (Spathi phyllum Kochii).	He H, Zhang Y, Ma Z, Li C, Liu C, Zhou Y, Li L, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.000131	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22062	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46673
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomycetospora rhizophila (DSM 46673, CGMCC 4.7134, NEAU-B-8)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042657905

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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