Pseudomonas agarici (DSM 11810, ATCC 25941, ICMP 2656)

Name: Pseudomonas agarici (DSM 11810, ATCC 25941, ICMP 2656)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13059

Type strain

Strain Designation 71A

Culture col. no. DSM 11810 ATCC 25941 ICMP 2656 ICPB PA144 NCPPB 2289 10 more

NCBI tax ID(s) 690598 46677

Special Collections DSMZ CCUG JCM CIP

History <- NCPPB <- J.M. Young; 71A DSM 11810 <-- NCPPB 2289 <-- J. M. Young 71A. CIP <- 2000, LMG <- NCPPB <- J. Young

Links

Pseudomonas agarici 71A is an obligate aerobe, mesophilic, Gram-negative plant pathogen that was isolated from mushroom .

Gram-negative motile rod-shaped obligate aerobe mesophilic plant pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 13750

LMG 2112,ATCC 25941,CIP 106703,DSM 11810,ICMP 2656,NCPPB 2289,PDDCC 2656,CCUG 23365,CCUG 32769,CECT 4467,CFBP 2063,VTT E-94513,BCRC 15817,CCRC 15817,JCM 12566,KACC 10146

@ref 20215

Last LPSN update 2025-12-16 09:50:00

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas agarici

Full scientific name Pseudomonas agarici Young 1970 (Approved Lists 1980)

BacDive ID	Other strains from **Pseudomonas agarici** (4)	Type strain
100181	P. agarici SF006366(FSU),
145594	P. agarici CCUG 28923
157418	P. agarici IMI 346974
157419	P. agarici IMI 346974b

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116148	negative	rod-shaped
125438			92.711
125438	negative		99
125439	negative		99.8
125439			91.1

Pigmentation

@ref	Production	Name
116148		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4497	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
38640	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116148	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4497	positive	growth	30	mesophilic
38640	positive	growth	25	mesophilic
67770	positive	growth	30	mesophilic
116148	positive	growth	5-30
116148	negative	growth	37
116148	negative	growth	41

Physiology and metabolism

Oxygen tolerance

116148

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116148	NaCl	positive	growth	0-8 %
116148	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
116148	16947 ChEBI	citrate	-	carbon source
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
116148	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
116148	17632 ChEBI	nitrate	-	reduction
116148	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
116148	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116148	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
116148	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116148	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116148	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
116148	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116148	caseinase	-	3.4.21.50
116148	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
116148	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116148	gelatinase	-
68369	gelatinase	-		from API 20NE
116148	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116148	lipase	-
68382	lipase (C 14)	-		from API zym
116148	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116148	ornithine decarboxylase	-	4.1.1.17
116148	oxidase	+
116148	protease	-
68382	trypsin	+	3.4.21.4	from API zym
116148	tryptophan deaminase	-
116148	tween esterase	-
116148	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ubiquinone biosynthesis	100	7 of 7
66794	sulfopterin metabolism	100	4 of 4
66794	resorcinol degradation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	propanol degradation	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	Entner Doudoroff pathway	100	10 of 10
66794	L-lactaldehyde degradation	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	alginate biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	taurine degradation	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	threonine metabolism	90	9 of 10
66794	starch degradation	90	9 of 10
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	vitamin B12 metabolism	88.24	30 of 34
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	arginine metabolism	83.33	20 of 24
66794	alanine metabolism	82.76	24 of 29
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	pentose phosphate pathway	81.82	9 of 11
66794	vitamin B6 metabolism	81.82	9 of 11
66794	3-chlorocatechol degradation	80	4 of 5
66794	phenol degradation	80	16 of 20
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	gallate degradation	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	purine metabolism	78.72	74 of 94
66794	glutathione metabolism	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	allantoin degradation	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	CMP-KDO biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	coenzyme A metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	carnitine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	non-pathway related	73.68	28 of 38
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	cysteine metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	photosynthesis	71.43	10 of 14
66794	heme metabolism	71.43	10 of 14
66794	tryptophan metabolism	71.05	27 of 38
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	propionate fermentation	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	pyrimidine metabolism	68.89	31 of 45
66794	IAA biosynthesis	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	4-hydroxymandelate degradation	66.67	6 of 9
66794	methane metabolism	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	methionine metabolism	65.38	17 of 26
66794	tyrosine metabolism	64.29	9 of 14
66794	lysine metabolism	64.29	27 of 42
66794	oxidative phosphorylation	63.74	58 of 91
66794	proline metabolism	63.64	7 of 11
66794	gluconeogenesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	3-phenylpropionate degradation	60	9 of 15
66794	myo-inositol biosynthesis	60	6 of 10
66794	cellulose degradation	60	3 of 5
66794	vitamin K metabolism	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	polyamine pathway	56.52	13 of 23
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	degradation of pentoses	53.57	15 of 28
66794	degradation of sugar acids	52	13 of 25
66794	pantothenate biosynthesis	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	quinate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	sulfate reduction	46.15	6 of 13
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	cholesterol biosynthesis	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	aspartate and asparagine metabolism	44.44	4 of 9
66794	arachidonic acid metabolism	44.44	8 of 18
66794	ascorbate metabolism	40.91	9 of 22
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116148	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
4497	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	+	+	-	+
4497	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	+	+	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116148	not determinedn.d.	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	+	-	+	-	-	-	-	+	-	-	-	+	+	+	-	+	+	+	-	+	+	+	-	-	-	-	-	+	+	+	+	+	+	+	-	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Fungi	#Mushroom

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Isolation date
4497	mushroom (Agaricus bisporus)	Agaricus bisporus	New Zealand	NZL	Australia and Oceania
67770	Mushroom (Agaricus bisporus)	Agaricus bisporus
116148	Agaricus bisporus, drippy gills		New Zealand	NZL	Australia and Oceania	1969

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
4497		1	Risk group (German classification) According to TRBA 466
116148		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2667527210 annotated assembly for Pseudomonas agarici LMG 2112	scaffold	GCA_900109755	46677.9	2667527210	46677	59.81
66792	ASM1338530v1 assembly for Pseudomonas agarici IPO3740	scaffold	GCA_013385305	46677.12		46677	48.09
67770	ASM28078v1 assembly for Pseudomonas agarici NCPPB 2289	scaffold	GCA_000280785	690598.6	2505679085	690598

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pseudomonas agarici 16S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF127589	557	46677
20218	Pseudomonas agarici 16S rRNA gene	D84005	1453	46677
20218	Pseudomonas agarici partial 16S rRNA gene, strain ICMP 2656T	AJ308298	1370	46677
4497	P.agarici 16S rRNA gene	Z76652	1491	46677
124043	Pseudomonas agarici partial 16S rRNA gene, strain NCPPB 2289	LN849841	934	690598

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas agarici NCPPB 2289
NCBI: GCA_000280785

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	91.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	82.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas agarici NCPPB 2289
PATRIC: 690598.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	98.95	no
125438	spore-forming	spore-formingⓘ	no	86.52	no
125438	aerobic	aerobicⓘ	yes	89.54	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	92.71	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	An efficient direct screening system for microorganisms that activate plant immune responses based on plant-microbe interactions using cultured plant cells.	Kurokawa M, Nakano M, Kitahata N, Kuchitsu K, Furuya T.	Sci Rep	10.1038/s41598-021-86560-0	2021
Biotechnology	Fungicide sensitivity of grapevine bacteria with plant growth-promoting traits and antagonistic activity as non-target microorganisms.	Andreolli M, Lampis S, Tosi L, Marano V, Zapparoli G.	World J Microbiol Biotechnol	10.1007/s11274-023-03569-5	2023
Genetics	Genomic Characterisation of Mushroom Pathogenic Pseudomonads and Their Interaction with Bacteriophages.	Storey N, Rabiey M, Neuman BW, Jackson RW, Mulley G.	Viruses	10.3390/v12111286	2020
	Microbial Diversity of Psychrotolerant Bacteria Isolated from Wild Flora of Andes Mountains and Patagonia of Chile towards the Selection of Plant Growth-Promoting Bacterial Consortia to Alleviate Cold Stress in Plants.	Vega-Celedon P, Bravo G, Velasquez A, Cid FP, Valenzuela M, Ramirez I, Vasconez IN, Alvarez I, Jorquera MA, Seeger M.	Microorganisms	10.3390/microorganisms9030538	2021
Metabolism	Different Ancestries of R Tailocins in Rhizospheric Pseudomonas Isolates.	Ghequire MG, Dillen Y, Lambrichts I, Proost P, Wattiez R, De Mot R.	Genome Biol Evol	10.1093/gbe/evv184	2015

References

#4497	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11810
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38640	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#116148	Collection of Institut Pasteur ; Curators of the CIP; CIP 106703
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas agarici (DSM 11810, ATCC 25941, ICMP 2656)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900109755

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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