Pseudomonas avellanae (DSM 11809, BPIC 631, ICPB 9746)

Name: Pseudomonas avellanae (DSM 11809, BPIC 631, ICPB 9746)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13058

Type strain

Strain Designation ISPAVE B.062, B. O62, F11

Culture col. no. DSM 11809 BPIC 631 ICPB 9746 NCPPB 3487 CCUG 51505 9 more

NCBI tax ID(s) 1154758 46257

Special Collections DSMZ CCUG JCM CIP

History <- J.D. Janse; PD 2378 <- P.G. Psallidas, BPIC DSM 11809 <-- J. D. Janse PD 2378 <-- P. G. Psallidas BPIC 631. CIP <- 1997, J.D. Janse, Plant Protection Serv., The Netherlands: strain F11 <- ISPAVE: strain B. O62 <- NCPPB <- P.G. Psallidas

Links

Pseudomonas avellanae ISPAVE B.062 is an obligate aerobe, Gram-negative, motile plant pathogen that was isolated from hazelnut .

Gram-negative motile rod-shaped obligate aerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49183

CIP 105176,ICMP 9746,NCPPB 3487,DSM 11809,CFBP 10963,LMG 21662,CBS 617.72,JCM 11937,CCUG 51505,CFBP 4060,CCM 7763

@ref 20215

Last LPSN update 2026-02-09 11:21:01

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas avellanae

Full scientific name Pseudomonas avellanae Janse et al. 1997

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116658	negative	rod-shaped
125438	negative		99
125439	negative		98.4

Pigmentation

@ref	Production	Name
116658		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4496	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39216	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
116658	CIP Medium 72	Medium recipe at CIP
116658	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4496	positive	growth	25
39216	positive	growth	25
67770	positive	growth	25
116658	positive	growth	25-30
116658	negative	growth	10
116658	negative	growth	37
116658	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
116658	obligate aerobe
125438	aerobe	91.344
125439	obligate aerobe	96.8

Spore formation

@ref	Spore formation	Confidence
125439		99.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116658	NaCl	positive	growth	0-4 %
116658	NaCl		growth	6 %
116658	NaCl		growth	8 %
116658	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
116658	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
116658	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
116658	17632 ChEBI	nitrate	-	reduction
116658	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
116658	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116658	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
116658	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116658	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116658	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
116658	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116658	caseinase	-	3.4.21.50
116658	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
116658	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116658	gelatinase	-
68369	gelatinase	-		from API 20NE
116658	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116658	lipase	-
68382	lipase (C 14)	-		from API zym
116658	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116658	ornithine decarboxylase	-	4.1.1.17
116658	oxidase	-
116658	protease	-
68382	trypsin	-	3.4.21.4	from API zym
116658	tryptophan deaminase	-
116658	tween esterase	+
116658	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116658	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
4496	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	+	-	+	+	-	-
4496	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	+	-	+	+	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116658	not determinedn.d.	+	+	-	-	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+	+	+	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	+	+	+	-	+	-	-	+	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	+	+	-	+	-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Fruit (Seed)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Isolation date
4496	hazelnut (Corylus avellana)	Corylus avellana	Greece	GRC	Europe
59216	Hazelnut (Corylus avellana)		Greece	GRC	Europe
67770	Corylus avellata	Corylus avellata	Greece	GRC	Europe
116658	Corylus avellana		Greece	GRC	Europe	1976

Taxonmaps

69479

Global distribution of 16S sequence X95745 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	325
Soil Samples	435
Animal Samples	369
Plant Samples	294
Total Samples	1423

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
4496		1	Risk group (German classification) According to TRBA 466
116658		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Pseudomonas avellanae BPIC 631	complete			2505313060	1154758	36.21
66792	ASM1464659v1 assembly for Pseudomonas avellanae JCM 11937	scaffold	GCA_014646595	46257.13	8112853369	46257
66792	CLC6_0_3 assembly for Pseudomonas avellanae BPIC 631	contig	GCA_000444135	1154758.6	2554235217	1154758
66792	Pav631_1.0 assembly for Pseudomonas avellanae BPIC 631	scaffold	GCA_000302915	1154758.3	2531839710	1154758

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pseudomonas avellanae 16S-23S rRNA ITS1, strain BPIC 631	AM489489	534	1154758
4496	Pseudomonas avellanae 16S rRNA gene	X95745	1384	46257
67770	Pseudomonas avellanae partial 16S rRNA gene, strain PD 2378	HF558391	1512	46257

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas avellanae JCM 11937
NCBI: GCA_014646595

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.40	no
125439	motility	BacteriaNetⓘ	yes	81.60	no
125439	spore_formation	BacteriaNetⓘ	no	99.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas avellanae BPIC 631 BPIC 631
NCBI: GCA_000302915.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	99.31	no
125438	aerobic	aerobicⓘ	yes	91.34	no
125438	spore-forming	spore-formingⓘ	no	82.05	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	86.39	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Emended description of Pseudomonas syringae pv. avellanae, causal agent of European hazelnut (Corylus avellana L.) bacterial canker and decline	Scortichini M, Ferrante P, Cozzolino L, Zoina A.	Eur J Plant Pathol	10.1007/s10658-015-0753-1	2016
	Comparative Genomic Analyses of Multiple Pseudomonas Strains Infecting Corylus avellana Trees Reveal the Occurrence of Two Genetic Clusters with Both Common and Distinctive Virulence and Fitness Traits.	Marcelletti S, Scortichini M.	PLoS One	10.1371/journal.pone.0131112	2015
Phylogeny	Ubiquity and Diversity of Cold Adapted Denitrifying Bacteria Isolated From Diverse Antarctic Ecosystems.	Cabezas A, Azziz G, Bovio-Winkler P, Fuentes L, Braga L, Wenzel J, Sabaris S, Tarlera S, Etchebehere C.	Front Microbiol	10.3389/fmicb.2022.827228	2022
Genetics	Genome analysis of the kiwifruit canker pathogen Pseudomonas syringae pv. actinidiae biovar 5.	Fujikawa T, Sawada H.	Sci Rep	10.1038/srep21399	2016
Phylogeny	Bacteria associated with hazelnut (Corylus avellana L.) decline are of two groups: Pseudomonas avellanae and strains resembling P. syringae pv. syringae.	Scortichini M, Marchesi U, Rossi MP, Di Prospero P.	Appl Environ Microbiol	10.1128/aem.68.2.476-484.2002	2002
Enzymology	Catalytic mechanism and mode of action of the periplasmic alginate epimerase AlgG.	Wolfram F, Kitova EN, Robinson H, Walvoort MT, Codee JD, Klassen JS, Howell PL.	J Biol Chem	10.1074/jbc.m113.533158	2014
Phylogeny	Extensive Field Survey, Laboratory and Greenhouse Studies Reveal Complex Nature of Pseudomonas syringae-Associated Hazelnut Decline in Central Italy.	Lamichhane JR, Bartoli C, Varvaro L.	PLoS One	10.1371/journal.pone.0147584	2016

References

#4496	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11809
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39216	; Curators of the CIP;
#59216	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51505
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116658	Collection of Institut Pasteur ; Curators of the CIP; CIP 105176
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas avellanae (DSM 11809, BPIC 631, ICPB 9746)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014646595

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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