Pseudomonas viridiflava (DSM 28655, UASWS0038, UASWS38)

Name: Pseudomonas viridiflava (DSM 28655, UASWS0038, UASWS38)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130571

Type strain

Strain Designation UASWS0038, UASWS38

Culture col. no. DSM 28655 UASWS0038 UASWS38

NCBI tax ID(s) 33069

Special Collections DSMZ

History <- F. Lefort, Univ. of Applied Sciences of Western Switzerland, Geneva; UASWS0038 <- G. Calmin

Links

Pseudomonas viridiflava UASWS0038 is a mesophilic plant pathogen that was isolated from Rhododendron leaf.

mesophilic plant pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399157

DSM 28655

@ref 20215

Last LPSN update 2026-02-09 11:31:15

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas viridiflava

Full scientific name Pseudomonas viridiflava (Burkholder 1930) Dowson 1939 (Approved Lists 1980)

Synonyms (1)

"Phytomonas viridiflava"

BacDive ID	Other strains from **Pseudomonas viridiflava** (4)	Type strain
13016	P. viridiflava PV6, DSM 11124, ATCC 13223, DSM 6694, NCPPB ... (type strain)
24401	P. viridiflava 625, DSM 6694, ATCC 13223 (type strain)
144183	P. viridiflava CCUG 23370, ICMP 7556a, NCPPB 2012, LMG 5399
157487	P. viridiflava IMI 349403

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.5
125439	negative	99.8
125439		90

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22021	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
22021	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22021	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.942
125439	obligate aerobe	99

Spore formation

@ref	Spore formation	Confidence
125439		99.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
22021	-	-	-	-	-	+	-	-	+	+	-	+	-	-	+	-	-	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22021	Rhododendron leaf	Geneva	Switzerland	CHE	Europe

Taxonmaps

69479

Global distribution of 16S sequence AY919300 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	147
Soil Samples	184
Animal Samples	195
Plant Samples	210
Total Samples	736

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
22021		1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	PseVir1.0 assembly for Pseudomonas viridiflava UASWS0038	contig	GCA_000307715	450396.6	2531839182	450396	39.15

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22021	Pseudomonas viridiflava strain UASWS0038 16S ribosomal RNA gene, complete sequence	AY919300	1481		450396

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas viridiflava UASWS0038
NCBI: GCA_000307715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.20	no
125439	motility	BacteriaNetⓘ	yes	90.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas viridiflava UASWS0038
PATRIC: 450396.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	99.11	no
125438	spore-forming	spore-formingⓘ	no	80.46	no
125438	aerobic	aerobicⓘ	yes	92.94	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	87.80	no

Literature

Title	Authors	Journal	DOI	Year
First Report of Leaf Blight on Saposhnikovia divaricata by Pseudomonas viridiflava in Gansu, China.	Wang Y, Zeng CY, Chen XR, Yang CD	Plant Dis	10.1094/PDIS-06-14-0641-PDN	2015
Whole-Genome Shotgun Sequence of Pseudomonas viridiflava, a Bacterium Species Pathogenic to Ararabidopsis thaliana.	Lefort F, Calmin G, Crovadore J, Osteras M, Farinelli L	Genome Announc	10.1128/genomeA.00116-12	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22021	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28655
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas viridiflava (DSM 28655, UASWS0038, UASWS38)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000307715

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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