Pseudomonas asuensis (DSM 17866, ATCC BAA-1264, JCM 13501)

Name: Pseudomonas asuensis (DSM 17866, ATCC BAA-1264, JCM 13501)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130568

Type strain

Strain Designation CP155-2

Culture col. no. DSM 17866 ATCC BAA-1264 JCM 13501 KCTC 32484 LMG 28687 1 more

NCBI tax ID(s) 1825787

Special Collections DSMZ JCM KCTC

History <- F. Garcia-Pichel, School of Life Sciences, Arizona State University, USA; CP155-2 <- G. S. N. Reddy; CP155-2 F. Garcia-Pichel CP 155-2.

Links

Pseudomonas asuensis CP155-2 is a mesophilic prokaryote that was isolated from biological soil crusts.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397723

LMG 28687,JCM 13501,KCTC 32484,DSM 17866

@ref 20215

Last LPSN update 2025-12-16 10:01:01

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas asuensis

Full scientific name Pseudomonas asuensis Reddy and Garcia-Pichel 2015

Synonyms (1)

Chryseomonas asuensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.75
125439	negative	99.8

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22018	REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22018	positive	growth	30	mesophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	93.3

Spore formation

@ref	Spore formation	Confidence
125439		99.6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
22018	+	-	-	-	-	+	+	+	+	+	+	+	-	+	+	+	-	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22018	biological soil crusts	Colorado Plateau	USA	USA	North America	38.3831	109.889 38.3831/109.889
67770	Biological soil crusts from the Colorado Plateau		USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AJ871471 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	244
Soil Samples	128
Animal Samples	827
Plant Samples	166
Total Samples	1365

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22018	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464675v1 assembly for Pseudomonas asuensis JCM 13501	scaffold	GCA_014646755	1825787.3	2990177867	1825787	55.78
124043	ASM4266006v1 assembly for Pseudomonas asuensis JCM 13501	contig	GCA_042660065			1825787	17.67

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudomonas asuensis partial 16S rRNA gene, type strain CP155-2T	AJ871471	1501		1825787

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas asuensis JCM 13501
NCBI: GCA_014646755

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	yes	85.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas asuensis JCM 13501
NCBI: GCA_014646755.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.75	no
125438	anaerobic	anaerobicⓘ	no	97.36	no
125438	aerobic	aerobicⓘ	yes	89.81	no
125438	spore-forming	spore-formingⓘ	no	79.36	no
125438	thermophilic	thermophileⓘ	no	100.00	yes
125438	flagellated	motile2+ⓘ	yes	86.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera.	Saati-Santamaria Z, Peral-Aranega E, Velazquez E, Rivas R, Garcia-Fraile P.	Biology (Basel)	10.3390/biology10080782	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22018	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17866
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas asuensis (DSM 17866, ATCC BAA-1264, JCM 13501)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014646755

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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