Name: Microbacter margulisiae ADRI
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130542

Type strain:

Species: Microbacter margulisiae

Strain Designation: ADRI

Culture col. no.: DSM 27471, JCM 19374

Strain history: I. Sánchez-Andrea strain ADRI.

NCBI tax ID(s): 1350067 (species)

SI-ID 408032

DSM 27471

Section

Microbacter margulisiae ADRI is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sediment of an acid rock drainage environment.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Porphyromonadaceae*
	Genus	*Microbacter*
	Species	**Microbacter margulisiae**
	Full Scientific Name (LPSN)	Microbacter margulisiae Sánchez-Andrea et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	no Confidence in %92.643

[Ref.: #22129]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22129]

Culture medium

MICROBACTER MEDIUM (DSMZ Medium 1571)

[Ref.: #22129]

Culture medium growth

[Ref.: #22129]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22129]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22129]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #22129]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22129]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.383

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

[Ref.: #67770]

Observation

quinones: MK-8, MK-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22129]	Sample type/isolated from	sediment of an acid rock drainage environment
[Ref.: #22129]	Geographic location (country and/or sea, region)	Huelva, Tinto River
[Ref.: #22129]	Country	Spain
[Ref.: #22129]	Country ISO 3 Code	ESP
[Ref.: #22129]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Sediment of an acid rock drainage environment
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tinto River
[Ref.: #67770]	Country	Spain
[Ref.: #67770]	Country ISO 3 Code	ESP
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Geologic
#Condition	#Acidic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LM643867 (>99% sequence identity) for Microbacter margulisiae subclade from Microbeatlas

Aquatic Samples	207
Soil Samples	91
Animal Samples	1367
Plant Samples	13
Total Samples	1678

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22129]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22129]	Microbacter margulisiae partial 16S rRNA gene, strain DSM 27471, isolate ADRI	LM643867	1488	ENA	1350067 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacter margulisiae DSM 27471	GCA_014192515	contig	GenBank	1350067 tax ID	*
[Ref.: #66792]	Microbacter margulisiae strain DSM 27471	1350067.3	wgs	PATRIC	1350067 tax ID	*
[Ref.: #66792]	Microbacter margulisiae DSM 27471	2824490045	draft	JGI IMG/M	1350067 tax ID	*

[Ref.: #22129]

GC-content

39.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbacter margulisiae strain DSM 27471 PATRIC: 1350067.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacter margulisiae strain DSM 27471 PATRIC: 1350067.3
[Ref.: #69480]	motile	no	89.883	no
[Ref.: #69480]	gram-positive	no	96.902	no
[Ref.: #69480]	anaerobic	yes	94.809	yes
[Ref.: #69480]	halophile	no	94.473	no
[Ref.: #69480]	spore-forming	no	94.454	no
[Ref.: #69480]	glucose-util	yes	86.183	no
[Ref.: #69480]	flagellated	no	98.192	no
[Ref.: #69480]	aerobic	no	92.694	no
[Ref.: #69480]	glucose-ferment	yes	52.916	no
[Ref.: #69480]	thermophile	no	92.596	yes

Availability in culture collections External links

[Ref.: #22129]

Culture collection no.

DSM 27471, JCM 19374

[Ref.: #89063]

SI-ID 408032

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacter margulisiae gen. nov., sp. nov., a propionigenic bacterium isolated from sediments of an acid rock drainage pond.	Sanchez-Andrea I, Sanz JL, Stams AJM	Int J Syst Evol Microbiol	10.1099/ijs.0.066241-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22129

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27471

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89063

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408032.1 )

* These data were automatically processed and therefore are not curated

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Microbacter margulisiae strain DSM 27471

Microbacter margulisiae strain DSM 27471

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