Name: Rhodopirellula rubra LF2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130536

Type strain:

Species: Rhodopirellula rubra

Strain Designation: LF2

Culture col. no.: DSM 25459, CECT 8075

Strain history: <- O. M. Lage, Faculty Sci., Univ. Porto, Portugal; LF2

NCBI tax ID(s): 980271 (species)

SI-ID 394456

DSM 25459, CECT 8075

Section

Rhodopirellula rubra LF2 is a mesophilic, Gram-negative bacterium that was isolated from epiphytic community of a marine macroalga .

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Pirellulales*
	Family	*Pirellulaceae*
	Genus	*Rhodopirellula*
	Species	**Rhodopirellula rubra**
	Full Scientific Name (LPSN)	Rhodopirellula rubra Bondoso et al. 2014

Synonym

Aporhodopirellula rubra

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.924

[Ref.: #21763]

Incubation period

>14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21763]

Culture medium

M13 VERRUCOMICROBIUM MEDIUM (DSMZ Medium 607)

[Ref.: #21763]

Culture medium growth

[Ref.: #21763]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21763]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21763]			growth	25 °C

[Ref.: #21763]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.979

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21763]	Sample type/isolated from	epiphytic community of a marine macroalga (Laminaria sp.)
[Ref.: #21763]	Host species	Laminaria
[Ref.: #21763]	Geographic location (country and/or sea, region)	Porto
[Ref.: #21763]	Country	Portugal
[Ref.: #21763]	Country ISO 3 Code	PRT
[Ref.: #21763]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Algae	#Brown Algae
#Host	#Other	#Epibiont

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ845500 (>99% sequence identity) for Rhodopirellula rubra from Microbeatlas

Aquatic Samples	693
Soil Samples	33
Animal Samples	183
Plant Samples	3
Total Samples	912

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21763]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21763]	Rhodopirellula rubra strain LF2 16S ribosomal RNA gene, partial sequence	HQ845500	1456	ENA	980271 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodopirellula rubra CECT 8075	GCA_014192335	scaffold	GenBank	980271 tax ID	*
[Ref.: #66792]	Rhodopirellula rubra strain CECT 8075	980271.3	wgs	PATRIC	980271 tax ID	*
[Ref.: #66792]	Rhodopirellula rubra CECT 8075	2824432718	draft	JGI IMG/M	980271 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodopirellula rubra CECT 8075 NCBI: GCA_014192335.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodopirellula rubra CECT 8075 NCBI: GCA_014192335.1
[Ref.: #69480]	flagellated	no	75.17	no
[Ref.: #69480]	gram-positive	no	96.973	no
[Ref.: #69480]	anaerobic	no	96.537	no
[Ref.: #69480]	aerobic	yes	81.069	no
[Ref.: #69480]	halophile	no	65.992	no
[Ref.: #69480]	spore-forming	no	88.587	no
[Ref.: #69480]	glucose-util	yes	85.928	no
[Ref.: #69480]	thermophile	no	99.15	no
[Ref.: #69480]	motile	yes	86.663	no
[Ref.: #69480]	glucose-ferment	no	83.667	no

Availability in culture collections External links

[Ref.: #21763]

Culture collection no.

DSM 25459, CECT 8075

[Ref.: #89058]

SI-ID 394456

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodopirellula lusitana sp. nov. and Rhodopirellula rubra sp. nov., isolated from the surface of macroalgae.	Bondoso J, Albuquerque L, Lobo-da-Cunha A, da Costa MS, Harder J, Lage OM	Syst Appl Microbiol	10.1016/j.syapm.2013.11.004	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21763

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25459

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89058

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID394456.1 )

* These data were automatically processed and therefore are not curated

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Rhodopirellula rubra CECT 8075

Rhodopirellula rubra CECT 8075

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