Name: Vespertiliibacter pulmonis E127/08
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130520

Type strain:

Species: Vespertiliibacter pulmonis

Strain Designation: E127/08

Culture col. no.: DSM 27238, CCUG 64585

Strain history: <- K. Mühldorfer, Leibniz Institute for Zoo and Wildlife Res., Berlin, Germany; E127/08

NCBI tax ID(s): 1443036 (species)

SI-ID 400704

DSM 27238, CCUG 64585

Other strains from Vespertiliibacter pulmonis

V. pulmonis CCUG 64587

Section

Vespertiliibacter pulmonis E127/08 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from lung of a deceased free-ranging noctule bat .

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Pasteurellaceae*
	Genus	*Vespertiliibacter*
	Species	**Vespertiliibacter pulmonis**
	Full Scientific Name (LPSN)	Vespertiliibacter pulmonis Mühldorfer et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.979

[Ref.: #22109]	Incubation period	1-2 days

[Ref.: #63137]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22109]

Culture medium

CHOCOLATE AGAR (DSMZ Medium 429b)

[Ref.: #22109]

Culture medium growth

[Ref.: #22109]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22109]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22109]			growth	37 °C
[Ref.: #63137]			growth	37 °C

[Ref.: #22109]	Temperature range	mesophilic
[Ref.: #63137]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22109]	Oxygen tolerance	aerobe
[Ref.: #63137]	Oxygen tolerance	microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68377]	maltose ChEBI	-	builds acid from	* from API NH
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68377]	sucrose ChEBI	-	builds acid from	* from API NH
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE, API NH
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68377]		indole ChEBI	no	* from API NH, API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH, API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68377]	beta-galactosidase	-	3.2.1.23	* from API NH
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #22109]	catalase	+	1.11.1.6
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #22109]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68377]	lipase	+		* from API NH
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22109]	23970	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #22109]	6240	+	+	-	-	-	-	+	+	-	-	+	-	-
[Ref.: #22109]	5949	-	+	+	-	-	-	-	+	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22109]	Sample type/isolated from	lung of a deceased free-ranging noctule bat (Nyctalus noctula)
[Ref.: #22109]	Host species	Nyctalus noctula
[Ref.: #22109]	Geographic location (country and/or sea, region)	Berlin
[Ref.: #22109]	Country	Germany
[Ref.: #22109]	Country ISO 3 Code	DEU
[Ref.: #22109]	Continent	Europe

[Ref.: #63137]	Sample type/isolated from	Lung of a noctule bat (Nyctalus noctula)
[Ref.: #63137]	Sampling date	2008-03-05
[Ref.: #63137]	Geographic location (country and/or sea, region)	Berlin
[Ref.: #63137]	Country	Germany
[Ref.: #63137]	Country ISO 3 Code	DEU
[Ref.: #63137]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	-
#Host Body-Site	#Oral cavity and airways	#Lung

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22109]	Vespertiliibacter pulmonis strain E127/08 16S ribosomal RNA gene, partial sequence	KF031240	1462	ENA	1443036 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vespertiliibacter pulmonis CCUG 64585	GCA_013377275	chromosome	GenBank	1443036 tax ID	*
[Ref.: #66792]	Vespertiliibacter pulmonis DSM 27238	GCA_003843855	scaffold	GenBank	1443036 tax ID	*
[Ref.: #66792]	Vespertiliibacter pulmonis strain CCUG 64585	1443036.4	wgs	PATRIC	1443036 tax ID	*
[Ref.: #66792]	Vespertiliibacter pulmonis strain DSM 27238	1443036.3	wgs	PATRIC	1443036 tax ID	*
[Ref.: #66792]	Vespertiliibacter pulmonis DSM 27238	2786546143	draft	JGI IMG/M	1443036 tax ID	*

[Ref.: #22109]

GC-content

38.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vespertiliibacter pulmonis CCUG 64585 NCBI: GCA_013377275.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vespertiliibacter pulmonis CCUG 64585 NCBI: GCA_013377275.1
[Ref.: #69480]	motile	no	87.027	no
[Ref.: #69480]	flagellated	no	96.751	no
[Ref.: #69480]	gram-positive	no	98.776	no
[Ref.: #69480]	anaerobic	no	99.109	yes
[Ref.: #69480]	aerobic	no	85.877	no
[Ref.: #69480]	halophile	no	57.477	no
[Ref.: #69480]	spore-forming	no	98.786	no
[Ref.: #69480]	thermophile	no	97.686	yes
[Ref.: #69480]	glucose-util	no	78.36	yes
[Ref.: #69480]	glucose-ferment	no	65.876	no

Availability in culture collections External links

[Ref.: #22109]

Culture collection no.

DSM 27238, CCUG 64585

[Ref.: #89043]

SI-ID 400704

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Vespertiliibacter pulmonis gen. nov., sp. nov. and two genomospecies as new members of the family Pasteurellaceae isolated from European bats.	Muhldorfer K, Speck S, Wibbelt G	Int J Syst Evol Microbiol	10.1099/ijs.0.062786-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22109

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27238

#63137 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 64585

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68377

Automatically annotated from API NH .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89043

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400704.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Vespertiliibacter pulmonis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Vespertiliibacter pulmonis CCUG 64585

Vespertiliibacter pulmonis CCUG 64585

Change proposal

Change proposal