Glaciimonas singularis (DSM 100199, CIP 110539, LMG 27070)

Name: Glaciimonas singularis (DSM 100199, CIP 110539, LMG 27070)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130507

Type strain

Strain Designation A2-57

Culture col. no. DSM 100199 CIP 110539 LMG 27070 A2-57 UCCCB36

NCBI tax ID(s) 1229971

Special Collections DSMZ CIP Literature strains UCCCB

History <- CIP <- A. P. Chung, Univ. Coimbra, Portugal; A2-57 Chung A.P. University of Coimbra CIP <- 2012, P.V. Morais, Coimbra Univ., IMAR-CMA, Coimbra, Portugal: strain A2-57

Links

Glaciimonas singularis A2-57 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from acidic water collected from a water treatment plant in former uranium mine.

Gram-negative rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 380616

LMG 27070,CIP 110539,DSM 100199

@ref 20215

Last LPSN update 2026-02-09 11:31:14

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Oxalobacteraceae

Genus Glaciimonas

Species Glaciimonas singularis

Full scientific name Glaciimonas singularis Chung et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30878	negative	1.5 µm	0.9 µm	rod-shaped

Pigmentation

30878

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
39786	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
22084	REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
122633	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
22084	positive	growth	25
30878	positive	growth	10-30
30878	positive	optimum	25
39786	positive	growth	25
67772	positive	minimum	10
67772	positive	optimum	25
67772	positive	maximum	30

Culture pH

@ref	Ability	Type	PH	PH range
30878	positive	optimum	6.5
67772	positive	optimum	6.0-7.0
30878	positive	growth	5.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

30878

Oxygen toleranceaerobe

Spore formation

30878

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30878	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
30878	16449 ChEBI	alanine	+	carbon source
30878	22599 ChEBI	arabinose	+	carbon source
30878	22653 ChEBI	asparagine	+	carbon source
30878	35391 ChEBI	aspartate	+	carbon source
30878	28757 ChEBI	fructose	+	carbon source
30878	28260 ChEBI	galactose	+	carbon source
30878	17234 ChEBI	glucose	+	carbon source
30878	29987 ChEBI	glutamate	+	carbon source
30878	17754 ChEBI	glycerol	+	carbon source
30878	27570 ChEBI	histidine	+	carbon source
30878	24996 ChEBI	lactate	+	carbon source
30878	15792 ChEBI	malonate	+	carbon source
30878	29864 ChEBI	mannitol	+	carbon source
30878	37684 ChEBI	mannose	+	carbon source
30878	51850 ChEBI	methyl pyruvate	+	carbon source
30878	17268 ChEBI	myo-inositol	+	carbon source
30878	506227 ChEBI	N-acetylglucosamine	+	carbon source
30878	26271 ChEBI	proline	+	carbon source
30878	17272 ChEBI	propionate	+	carbon source
30878	26490 ChEBI	quinate	+	carbon source
30878	30911 ChEBI	sorbitol	+	carbon source
30878	53423 ChEBI	tween 40	+	carbon source
30878	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30878	acid phosphatase	+	3.1.3.2
30878	alkaline phosphatase	+	3.1.3.1
30878	catalase	+	1.11.1.6
30878	cytochrome oxidase	+	1.9.3.1
30878	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Engineered	#Waste	#Water treatment plant
#Environmental	#Aquatic	-
#Condition	#Acidic	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
22084	acidic water collected from a water treatment plant in former uranium mine		Poco das Cobras, Urgeirica, Central Portugal	Portugal	PRT	Europe
67772	Uranium mine wastewater treatment plant (acidic water sample -pH 5)	2009	Viseu, Urgeiriça	Portugal	PRT	Europe
122633	Environment, Soil, waste water treatment plant		Urgeirica	Portugal	PRT	Europe	2009

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22084	1	Risk group (German classification)
67772	1
122633	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22084	Glaciimonas singularis strain A2-57 16S ribosomal RNA gene, partial sequence	JX218021	1507		1229971

GC content

30878

GC-content (mol%)55

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glaciimonas alpina sp. nov. isolated from alpine glaciers and reclassification of Glaciimonas immobilis Cr9-12 as the type strain of Glaciimonas alpina sp. nov.	Frasson D, Udovicic M, Frey B, Lapanje A, Zhang DC, Margesin R, Sievers M	Int J Syst Evol Microbiol	10.1099/ijs.0.000174	2015
Phylogeny	Noviherbaspirillum suwonense sp. nov., isolated from an air sample.	Kim SJ, Moon JY, Weon HY, Hong SB, Seok SJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.057372-0	2014
Phylogeny	Glaciimonas singularis sp. nov., isolated from a uranium mine wastewater treatment plant.	Chung AP, Tiago I, Nobre MF, Verissimo A, Morais PV	Int J Syst Evol Microbiol	10.1099/ijs.0.046581-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22084	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100199
#27208	IJSEM 2344 2013 ( DOI 10.1099/ijs.0.046581-0 , PubMed 23178726 )
#30878	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27208
#39786	; Curators of the CIP;
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#122633	Collection of Institut Pasteur ; Curators of the CIP; CIP 110539
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Glaciimonas singularis (DSM 100199, CIP 110539, LMG 27070)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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