Name: Glaciimonas singularis A2-57
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130507

Type strain:

Species: Glaciimonas singularis

Strain Designation: A2-57

Culture col. no.: DSM 100199, CIP 110539, LMG 27070, UCCCB36

Strain history: CIP <- 2012, P.V. Morais, Coimbra Univ., IMAR-CMA, Coimbra, Portugal: strain A2-57

NCBI tax ID(s): 1229971 (species)

SI-ID 380616

LMG 27070, CIP 110539, DSM 100199

Special Collections

Section

When using BacDive for research please cite our paper

Glaciimonas singularis A2-57 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from acidic water collected from a water treatment plant in former uranium mine.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Glaciimonas*
	Species	**Glaciimonas singularis**
	Full Scientific Name (LPSN)	Glaciimonas singularis Chung et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30878]	Gram stain	negative

[Ref.: #30878]	Cell length	1.5 µm

[Ref.: #30878]	Cell width	0.9 µm

[Ref.: #30878]	Cell shape	rod-shaped

[Ref.: #30878]	Motility	no

[Ref.: #30878]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #39786]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #39786]

Culture medium growth

[Ref.: #39786]

Culture medium composition

expand / minimize

[Ref.: #22084]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #22084]

Culture medium growth

[Ref.: #22084]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22084]

Culture medium composition

expand / minimize

[Ref.: #122633]

Culture medium

CIP Medium 566

[Ref.: #122633]

Culture medium growth

[Ref.: #122633]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #22084]	growth	25 °C
[Ref.: #30878]	growth	10-30 °C
[Ref.: #30878]	optimum	25 °C
[Ref.: #39786]	growth	25 °C
[Ref.: #67772]	minimum	10 °C
[Ref.: #67772]	optimum	25 °C
[Ref.: #67772]	maximum	30 °C

		pH
[Ref.: #30878]	optimum	6.5
[Ref.: #67772]	optimum	6.0-7.0
[Ref.: #30878]	growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30878]

Oxygen tolerance

aerobe

[Ref.: #30878]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30878]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #30878]	alanine ChEBI	+	carbon source
[Ref.: #30878]	arabinose ChEBI	+	carbon source
[Ref.: #30878]	asparagine ChEBI	+	carbon source
[Ref.: #30878]	aspartate ChEBI	+	carbon source
[Ref.: #30878]	fructose ChEBI	+	carbon source
[Ref.: #30878]	galactose ChEBI	+	carbon source
[Ref.: #30878]	glucose ChEBI	+	carbon source
[Ref.: #30878]	glutamate ChEBI	+	carbon source
[Ref.: #30878]	glycerol ChEBI	+	carbon source
[Ref.: #30878]	histidine ChEBI	+	carbon source
[Ref.: #30878]	lactate ChEBI	+	carbon source
[Ref.: #30878]	malonate ChEBI	+	carbon source
[Ref.: #30878]	mannitol ChEBI	+	carbon source
[Ref.: #30878]	mannose ChEBI	+	carbon source
[Ref.: #30878]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30878]	myo-inositol ChEBI	+	carbon source
[Ref.: #30878]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30878]	proline ChEBI	+	carbon source
[Ref.: #30878]	propionate ChEBI	+	carbon source
[Ref.: #30878]	quinate ChEBI	+	carbon source
[Ref.: #30878]	sorbitol ChEBI	+	carbon source
[Ref.: #30878]	tween 40 ChEBI	+	carbon source
[Ref.: #30878]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30878]	acid phosphatase	+	3.1.3.2
[Ref.: #30878]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30878]	catalase	+	1.11.1.6
[Ref.: #30878]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30878]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22084]	Sample type/isolated from	acidic water collected from a water treatment plant in former uranium mine
[Ref.: #22084]	Geographic location (country and/or sea, region)	Poco das Cobras, Urgeirica, Central Portugal
[Ref.: #22084]	Country	Portugal
[Ref.: #22084]	Country ISO 3 Code	PRT
[Ref.: #22084]	Continent	Europe

[Ref.: #67772]	Sample type/isolated from	Uranium mine wastewater treatment plant (acidic water sample -pH 5)
[Ref.: #67772]	Sampling date	2009
[Ref.: #67772]	Geographic location (country and/or sea, region)	Viseu, Urgeiriça
[Ref.: #67772]	Country	Portugal
[Ref.: #67772]	Country ISO 3 Code	PRT
[Ref.: #67772]	Continent	Europe

[Ref.: #122633]	Sample type/isolated from	Environment, Soil, waste water treatment plant
[Ref.: #122633]	Geographic location (country and/or sea, region)	Urgeirica
[Ref.: #122633]	Country	Portugal
[Ref.: #122633]	Country ISO 3 Code	PRT
[Ref.: #122633]	Continent	Europe
[Ref.: #122633]	Isolation date	2009
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Engineered	#Waste	#Water treatment plant
#Environmental	#Aquatic	-
#Condition	#Acidic	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22084]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1
[Ref.: #122633]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22084]	Glaciimonas singularis strain A2-57 16S ribosomal RNA gene, partial sequence	JX218021	1507	GenBank ENA	1229971 tax ID

[Ref.: #30878]

GC-content

55 mol%

Availability in culture collections External links

[Ref.: #22084]

Culture collection no.

DSM 100199, CIP 110539, LMG 27070, UCCCB36

[Ref.: #89030]

SI-ID 380616

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glaciimonas alpina sp. nov. isolated from alpine glaciers and reclassification of Glaciimonas immobilis Cr9-12 as the type strain of Glaciimonas alpina sp. nov.	Frasson D, Udovicic M, Frey B, Lapanje A, Zhang DC, Margesin R, Sievers M	Int J Syst Evol Microbiol	10.1099/ijs.0.000174	2015	*
Phylogeny	Noviherbaspirillum suwonense sp. nov., isolated from an air sample.	Kim SJ, Moon JY, Weon HY, Hong SB, Seok SJ, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.057372-0	2014	*
Phylogeny	Glaciimonas singularis sp. nov., isolated from a uranium mine wastewater treatment plant.	Chung AP, Tiago I, Nobre MF, Verissimo A, Morais PV	Int J Syst Evol Microbiol	10.1099/ijs.0.046581-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22084

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100199

#30878

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27208 (see below)

#39786 ; Curators of the CIP;
#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#89030

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID380616.1 )

#122633 Collection of Institut Pasteur ; Curators of the CIP; CIP 110539

#27208

IJSEM 2344 2013 ( DOI 10.1099/ijs.0.046581-0 , PubMed 23178726 )

* These data were automatically processed and therefore are not curated

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