Nocardiopsis algeriensis (DSM 45462, CECT 8712, B32)

Name: Nocardiopsis algeriensis (DSM 45462, CECT 8712, B32)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130496

Type strain

Strain Designation B32

Culture col. no. DSM 45462 CECT 8712 B32

NCBI tax ID(s) 1478215

Special Collections DSMZ Wink compendium

History <- N. Sabaou, LPBVB, Kouba, Algeria; B32

Links

Nocardiopsis algeriensis B32 is a bacterium that builds an aerial mycelium and was isolated from Saharan soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398986

CECT 8712,DSM 45462

@ref 20215

Last LPSN update 2026-02-09 11:31:14

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Nocardiopsidaceae

Genus Nocardiopsis

Species Nocardiopsis algeriensis

Full scientific name Nocardiopsis algeriensis Bouras et al. 2015

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		93.5
125438		90.825	positive

Colony morphology

@ref	Colony color	Medium used
69397	Colourless	ISP 5
69397	Beige (1001)	ISP 2
69397	Light ivory (1015)	ISP 3
69397	Light ivory (1015)	ISP 4
69397	Light ivory (1015)	ISP 7
69397	Light ivory (1015)	suter with tyrosine
69397	Sand yellow (1002)	ISP 6
69397	Sand yellow (1002)	suter without tyrosine

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69397	Aerial mycelium		ISP 2
69397	Aerial mycelium	Cream (9001)	ISP 3
69397	Aerial mycelium	Cream (9001)	ISP 4
69397	Aerial mycelium		ISP 5
69397	Aerial mycelium		ISP 6
69397	Aerial mycelium		ISP 7
69397	Aerial mycelium		suter with tyrosine
69397	Aerial mycelium		suter without tyrosine

Pigmentation

@ref	Production	Color	Name
69397			melanin pigment
69397		Light ivory (9001)	soluble pigment

Multimedia

@ref:	69397
multimedia content:	DSM_45462_image3.jpeg
multimedia.multimedia content:	DSM_45462_image3.jpeg
caption:	Plates (514, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69397
multimedia content:	DSM_45462_image4.jpeg
multimedia.multimedia content:	DSM_45462_image4.jpeg
caption:	Plates (514, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21699	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
21699	NUTRIMENT AGAR (DSMZ Medium 1259)		Medium recipe at MediaDive	Name: NUTRIMENT AGAR (DSMZ Medium 1259) Composition: Agar 20.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Meat extract 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21699	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	93.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69397	NaCl	positive	growth	0-7.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69397	22599 ChEBI	arabinose	+	growth
69397	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69397	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
69397	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69397	17268 ChEBI	inositol	+/-	growth
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69397	37684 ChEBI	mannose	+	growth
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
69397	16634 ChEBI	raffinose	-	growth
69397	26546 ChEBI	rhamnose	-	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69397	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69397	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69397	+	-	-	+	-	-	+	+	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69397	not determinedn.d.	+	+/-	+	+/-	+	+/-	+/-	-	+/-	+/-	+/-	-	-	-	+	+/-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Desert
#Climate	#Hot	#Arid

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
21699	Saharan soil	Touat region, Adrar province, Aougrout (28°69'16''N, 0°31'62''E)	Algeria	DZA	Africa	29.1544	0.5339 29.1544/0.5339

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21699	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420369v1 assembly for Nocardiopsis algeriensis CECT 8712	scaffold	GCA_014203695	1478215.3	2863327961	1478215	67.52

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21699	Nocardiopsis algeriensis strain B32 16S ribosomal RNA gene, partial sequence	KJ470139	1460		1478215

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nocardiopsis algeriensis CECT 8712
NCBI: GCA_014203695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	81.10	no
125439	motility	BacteriaNetⓘ	no	77.60	no
125439	gram_stain	BacteriaNetⓘ	positive	76.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	93.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardiopsis algeriensis CECT 8712
NCBI: GCA_014203695.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.83	no
125438	anaerobic	anaerobicⓘ	no	97.33	no
125438	aerobic	aerobicⓘ	yes	89.56	no
125438	spore-forming	spore-formingⓘ	yes	76.78	no
125438	thermophilic	thermophileⓘ	no	92.78	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardiopsis algeriensis sp. nov., an alkalitolerant actinomycete isolated from Saharan soil.	Bouras N, Meklat A, Zitouni A, Mathieu F, Schumann P, Sproer C, Sabaou N, Klenk HP	Antonie Van Leeuwenhoek	10.1007/s10482-014-0329-7	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21699	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45462
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69397	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardiopsis algeriensis (DSM 45462, CECT 8712, B32)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014203695

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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