Name: Nocardiopsis mangrovei HA11166
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130495

Type strain:

Species: Nocardiopsis mangrovei

Strain Designation: HA11166

Culture col. no.: DSM 46665, CGMCC 4.7119

Strain history: <- H. Huang,Chinese Academy of Tropical Agricultural Sciences, Hainan,China; HA11166 <- H. Wei

NCBI tax ID(s): 1179818 (species)

Section

Nocardiopsis mangrovei HA11166 is a mesophilic bacterium that builds an aerial mycelium and was isolated from mangrove soil.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Nocardiopsidaceae*
	Genus	*Nocardiopsis*
	Species	"Nocardiopsis mangrovei"
	Full Scientific Name (LPSN)	Nocardiopsis mangrovei Huang et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69461]	Colony color	Grey beige (1019), sand yellow (1002)
[Ref.: #69461]	Cultivation medium used	suter with tyrosine

[Ref.: #69461]	Colony color	Colourless
[Ref.: #69461]	Cultivation medium used	ISP 7

[Ref.: #69461]	Colony color	Brown beige (1011), ivory (1014)
[Ref.: #69461]	Cultivation medium used	suter without tyrosine

[Ref.: #69461]	Colony color	Broom yellow (1032)
[Ref.: #69461]	Cultivation medium used	ISP 2

[Ref.: #69461]	Colony color	Honey yellow (1005)
[Ref.: #69461]	Cultivation medium used	ISP 6

[Ref.: #69461]	Colony color	Ivory (1014)
[Ref.: #69461]	Cultivation medium used	ISP 3

[Ref.: #69461]	Colony color	Light ivory (1015)
[Ref.: #69461]	Cultivation medium used	ISP 4

[Ref.: #69461]	Colony color	Light ivory (1015)
[Ref.: #69461]	Cultivation medium used	ISP 5

[Ref.: #69461]	Pigment production	no
[Ref.: #69461]	Pigment name	Melanin
[Ref.: #69461]	Pigment production	yes
[Ref.: #69461]	Pigmentation color	Maize yellow (1006)
[Ref.: #69461]	Pigment name	soluble pigment

[Ref.: #69461]	Multicellular complex forming ability	yes
[Ref.: #69461]	Multicellular complex name	Aerial mycelium
[Ref.: #69461]	Multicellular complex color	Pure white (9010)
[Ref.: #69461]	Medium Name (multicellularity)	ISP 2

[Ref.: #69461]	Multicellular complex forming ability	yes
[Ref.: #69461]	Multicellular complex name	Aerial mycelium
[Ref.: #69461]	Multicellular complex color	Pure white (9010)
[Ref.: #69461]	Medium Name (multicellularity)	ISP 3

[Ref.: #69461]	Multicellular complex forming ability	no
[Ref.: #69461]	Multicellular complex name	Aerial mycelium
[Ref.: #69461]	Medium Name (multicellularity)	ISP 4

[Ref.: #69461]	Multicellular complex forming ability	yes
[Ref.: #69461]	Multicellular complex name	Aerial mycelium
[Ref.: #69461]	Multicellular complex color	Traffic white (9016)
[Ref.: #69461]	Medium Name (multicellularity)	ISP 5

[Ref.: #69461]	Multicellular complex forming ability	no
[Ref.: #69461]	Multicellular complex name	Aerial mycelium
[Ref.: #69461]	Medium Name (multicellularity)	ISP 6

[Ref.: #69461]	Multicellular complex forming ability	no
[Ref.: #69461]	Multicellular complex name	Aerial mycelium
[Ref.: #69461]	Medium Name (multicellularity)	ISP 7

[Ref.: #69461]	Multicellular complex forming ability	no
[Ref.: #69461]	Multicellular complex name	Aerial mycelium
[Ref.: #69461]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69461]	Multicellular complex forming ability	no
[Ref.: #69461]	Multicellular complex name	Aerial mycelium
[Ref.: #69461]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

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Caption:

Medium 514 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21698]			growth	37 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69461]		NaCl		growth	0-7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69461]	arabinose ChEBI	+	growth
[Ref.: #69461]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69461]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69461]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69461]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69461]	mannose ChEBI	+/-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69461]	raffinose ChEBI	-	growth
[Ref.: #69461]	rhamnose ChEBI	+	growth
[Ref.: #69461]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69461]	xylose ChEBI	+/-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69461]	3954	-	-	-	+	-	-	+	-	-	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69461]	6138	not determinedn.d.	+	+/-	+	+/-	+	+	+/-	-	-	+	+/-	-	-	-	+/-	+/-	+/-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21698]	Sample type/isolated from	mangrove soil
[Ref.: #21698]	Geographic location (country and/or sea, region)	Hainan Dongzhaigang National Natural Reserve
[Ref.: #21698]	Country	China
[Ref.: #21698]	Country ISO 3 Code	CHN
[Ref.: #21698]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

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Global distribution of 16S sequence JQ799045 (>99% sequence identity) for Nocardiopsis from Microbeatlas

Aquatic Samples
Soil Samples	60
Animal Samples	6
Plant Samples	2
Total Samples	68

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21698]	Nocardiopsis mangrovei strain HA11166 16S ribosomal RNA gene, partial sequence	JQ799045	1444	ENA	1179818 tax ID

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GC-content

73.7 mol%

Availability in culture collections External links

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Culture collection no.

DSM 46665, CGMCC 4.7119

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardiopsis mangrovei sp. nov., isolated from mangrove sediment.	Huang HQ, Xing SS, Yuan WD, Wang Y, Liu M, Sun QG, Lin XZ, Bao SX	Antonie Van Leeuwenhoek	10.1007/s10482-015-0447-x	2015	*
Phylogeny	Nocardiopsissediminis sp. nov., isolated from mangrove sediment.	Muangham S, Suksaard P, Mingma R, Matsumoto A, Takahashi Y, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001273	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21698

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46665

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69461

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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