Nocardiopsis mangrovi (DSM 46665, CGMCC 4.7119, HA11166)

Name: Nocardiopsis mangrovi (DSM 46665, CGMCC 4.7119, HA11166)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130495

Type strain

Strain Designation HA11166

Culture col. no. DSM 46665 CGMCC 4.7119 HA11166

NCBI tax ID(s) 1179818

Special Collections DSMZ Wink compendium

Links

Nocardiopsis mangrovi HA11166 is a mesophilic prokaryote that builds an aerial mycelium and was isolated from mangrove soil.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 399481

DSM 46665

@ref 20215

Last LPSN update 2025-12-16 10:01:00

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Nocardiopsidaceae

Genus Nocardiopsis

Species Nocardiopsis mangrovi

Full scientific name Nocardiopsis mangrovi corrig. Huang et al. 2024

Synonyms (1)

Nocardiopsis mangrovei

Morphology

Colony morphology

@ref	Colony color	Medium used
69461	Grey beige (1019), sand yellow (1002)	suter with tyrosine
69461	Colourless	ISP 7
69461	Brown beige (1011), ivory (1014)	suter without tyrosine
69461	Broom yellow (1032)	ISP 2
69461	Honey yellow (1005)	ISP 6
69461	Ivory (1014)	ISP 3
69461	Light ivory (1015)	ISP 4
69461	Light ivory (1015)	ISP 5

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69461	Aerial mycelium	Pure white (9010)	ISP 2
69461	Aerial mycelium	Pure white (9010)	ISP 3
69461	Aerial mycelium		ISP 4
69461	Aerial mycelium	Traffic white (9016)	ISP 5
69461	Aerial mycelium		ISP 6
69461	Aerial mycelium		ISP 7
69461	Aerial mycelium		suter with tyrosine
69461	Aerial mycelium		suter without tyrosine

Pigmentation

@ref	Production	Name
69461		Melanin
69461		soluble pigment

Multimedia

@ref:	21698
multimedia content:	DSM_46665.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46665.jpg
caption:	Medium 514 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21698	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21698	positive	growth	37	mesophilic

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69461	NaCl	positive	growth	0-7.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69461	22599 ChEBI	arabinose	+	growth
69461	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69461	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
69461	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69461	17268 ChEBI	inositol	-	growth
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69461	37684 ChEBI	mannose	+/-	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69461	16634 ChEBI	raffinose	-	growth
69461	26546 ChEBI	rhamnose	+	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69461	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
69461	18222 ChEBI	xylose	+/-	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	+	3.5.1.5	from API Coryne
68382	valine arylamidase	+		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69461	-	-	-	+	-	-	+	-	-	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69461	not determinedn.d.	+	+/-	+	+/-	+	+	+/-	-	-	+	+/-	-	-	-	+/-	+/-	+/-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21698	mangrove soil	Hainan Dongzhaigang National Natural Reserve	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ799045 (>99% sequence identity) for Nocardiopsis from Microbeatlas

Aquatic Samples
Soil Samples	60
Animal Samples	6
Plant Samples	2
Total Samples	68

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21698	Nocardiopsis mangrovei strain HA11166 16S ribosomal RNA gene, partial sequence	JQ799045	1444		1179818

GC content

21698

GC-content (mol%)73.7

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardiopsis mangrovei sp. nov., isolated from mangrove sediment.	Huang HQ, Xing SS, Yuan WD, Wang Y, Liu M, Sun QG, Lin XZ, Bao SX	Antonie Van Leeuwenhoek	10.1007/s10482-015-0447-x	2015
Phylogeny	Nocardiopsissediminis sp. nov., isolated from mangrove sediment.	Muangham S, Suksaard P, Mingma R, Matsumoto A, Takahashi Y, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001273	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21698	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46665
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69461	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardiopsis mangrovi (DSM 46665, CGMCC 4.7119, HA11166)

Name and taxonomic classification

Morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Halophily

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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