Nocardioides deserti (DSM 26045, CGMCC 4.7183, SC8A-24)

Name: Nocardioides deserti (DSM 26045, CGMCC 4.7183, SC8A-24)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130494

Type strain

Strain Designation SC8A-24

Culture col. no. DSM 26045 CGMCC 4.7183 SC8A-24 JCM 33040

NCBI tax ID(s) 1588644

Special Collections DSMZ JCM

History <- Chinese Acad. Med. Sciences & Peking Union Medical College; SC8A-24 <- Y. Dong CGMCC 4.7183 <-- L. Tuo; Inst. of Med. Biotechnol., Chin. Acad. Med. Sci., China; SC8A-24.

Links

Nocardioides deserti SC8A-24 is a mesophilic prokaryote that was isolated from saline–alkaline soil in the rhizosphere of Alhagi sparsifolia.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404835

DSM 26045

@ref 20215

Last LPSN update 2026-02-09 11:31:14

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides deserti

Full scientific name Nocardioides deserti Tuo et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.2

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21697	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
21697	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21697	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.1

Observation

67770

Observationquinones: MK-8(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host Body-Site	#Plant	#Rhizosphere
#Condition	#Alkaline	-
#Condition	#Saline	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
21697	saline–alkaline soil in the rhizosphere of Alhagi sparsifolia	Alhagi sparsifolia	Xinjiang, Taklimakan desert (37° 02' 38'' N 80° 15' 1''E)	China	CHN	Asia	37.0439	80.2503 37.0439/80.2503
67770	Rhizosphere soil of Alhagis parsifolia from the Taklimakan desert	Alhagis parsifolia	Xinjiang Province, north-west China	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21697	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464603v1 assembly for Nocardioides deserti CGMCC 4.7183	scaffold	GCA_014646035	1588644.4	8112165869	1588644	72.58
66792	ASM1426602v1 assembly for Nocardioides deserti SC8A-24	contig	GCA_014266025	1588644.3	2921383071	1588644	70.91

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21697	Nocardioides deserti strain SC8A-24 16S ribosomal RNA gene, partial sequence	KM816582	1482		1588644

GC content

@ref	GC-content (mol%)	Method
21697	71	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nocardioides deserti CGMCC 4.7183
NCBI: GCA_014646035

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	65.60	no
125439	motility	BacteriaNetⓘ	no	62.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardioides deserti CGMCC 4.7183
NCBI: GCA_014646035.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.02	no
125438	anaerobic	anaerobicⓘ	no	96.90	no
125438	aerobic	aerobicⓘ	yes	85.91	no
125438	spore-forming	spore-formingⓘ	no	56.30	no
125438	thermophilic	thermophileⓘ	no	93.55	yes
125438	flagellated	motile2+ⓘ	no	64.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides deserti sp. nov., an actinobacterium isolated from desert soil.	Tuo L, Dong YP, Habden X, Liu JM, Guo L, Liu XF, Chen L, Jiang ZK, Liu SW, Zhang YB, Zhang YQ, Sun CH	Int J Syst Evol Microbiol	10.1099/ijs.0.000147	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21697	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26045
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardioides deserti (DSM 26045, CGMCC 4.7183, SC8A-24)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014646035

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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