Rhodococcus soli (DSM 46662, JCM 19627, KACC 17838)

Name: Rhodococcus soli (DSM 46662, JCM 19627, KACC 17838)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130488

Type strain

Strain Designation DSD51W

Culture col. no. DSM 46662 JCM 19627 KACC 17838 KCTC 29259 DSD51W

NCBI tax ID(s) 1543852

Special Collections DSMZ JCM KCTC Wink compendium

Links

Rhodococcus soli DSD51W is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402984

JCM 19627,DSM 46662

@ref 20215

Last LPSN update 2025-12-16 10:01:00

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Rhodococcus

Species Rhodococcus soli

Full scientific name Rhodococcus soli Li et al. 2015

Synonyms (1)

Prescottella soli

Morphology

Colony morphology

@ref	Colony color	Medium used
69460	Colourless	ISP 4
69460	Colourless	ISP 5
69460	Colourless	ISP 7
69460	Colourless	suter with tyrosine
69460	Colourless	suter without tyrosine
69460	Colourless	ISP 3
69460	Sand yellow (1002)	ISP 2
69460	Sand yellow (1002)	ISP 6

Multicellular morphology

@ref	Complex name	Medium name
69460	Aerial mycelium	ISP 2
69460	Aerial mycelium	ISP 3
69460	Aerial mycelium	ISP 4
69460	Aerial mycelium	ISP 5
69460	Aerial mycelium	ISP 6
69460	Aerial mycelium	ISP 7
69460	Aerial mycelium	suter with tyrosine
69460	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Production	Name
69460		Melanin
69460		soluble pigment

Multimedia

@ref:	21760
multimedia content:	DSM_46662.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46662.jpg
caption:	Medium 553 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	69460
multimedia content:	DSM_46662_image3.jpeg
multimedia.multimedia content:	DSM_46662_image3.jpeg
caption:	Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69460
multimedia content:	DSM_46662_image4.jpeg
multimedia.multimedia content:	DSM_46662_image4.jpeg
caption:	Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21760	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
21760	GPHF-MEDIUM (DSMZ Medium 553)		Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21760	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69460	NaCl	positive	growth	0-2.5 %

Observation

67770

Observationquinones: MK-8(H₂), MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69460	22599 ChEBI	arabinose	-	growth
69460	62968 ChEBI	cellulose	+/-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69460	28757 ChEBI	fructose	-	growth
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
69460	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69460	17268 ChEBI	inositol	+/-	growth
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69460	37684 ChEBI	mannose	-	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69460	16634 ChEBI	raffinose	+/-	growth
69460	26546 ChEBI	rhamnose	+/-	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69460	17992 ChEBI	sucrose	+/-	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69460	18222 ChEBI	xylose	+/-	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	+		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69460	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69460	not determinedn.d.	+/-	-	-	+/-	+	+	+/-	+/-	-	+	+	-	-	-	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
21760	soil	Kyoto Park (E135°46', N35°)	Japan	JPN	Asia	35	135.767 35/135.767
67770	Soil from Kyoto		Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KJ939314 (>99% sequence identity) for Rhodococcus from Microbeatlas

Aquatic Samples	4265
Soil Samples	18366
Animal Samples	5588
Plant Samples	3054
Total Samples	31273

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21760	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4604276v1 assembly for Prescottella soli DSM 46662	scaffold	GCA_046042765	1543852	72.88

Genome browser: GCA_046042765

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21760	Prescottella soli strain DSD51W 16S ribosomal RNA gene, partial sequence	KJ939314	1537		1543852

GC content

@ref	GC-content (mol%)	Method
21760	68.4	high performance liquid chromatography (HPLC)
67770	66.8-70	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodococcus agglutinans sp. nov., an actinobacterium isolated from a soil sample.	Guo QQ, Ming H, Meng XL, Duan YY, Gao R, Zhang JX, Huang JR, Li WJ, Nie GX	Antonie Van Leeuwenhoek	10.1007/s10482-015-0421-7	2015
Phylogeny	Rhodococcus soli sp. nov., an actinobacterium isolated from soil using a resuscitative technique.	Li SH, Yu XY, Park DJ, Hozzein WN, Kim CJ, Shu WS, Wadaan MA, Ding LX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0334-x	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21760	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46662
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69460	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Rhodococcus soli (DSM 46662, JCM 19627, KACC 17838)

Name and taxonomic classification

Morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_046042765

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media