Name: Rhodococcus soli DSD51W
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130488

Type strain:

Species: Rhodococcus soli

Strain Designation: DSD51W

Culture col. no.: DSM 46662, JCM 19627, KACC 17838, KCTC 29259

Strain history: W.-J. Li DSD51W.

NCBI tax ID(s): 1543852 (species)

SI-ID 402984

DSM 46662

Section

Rhodococcus soli DSD51W is a mesophilic prokaryote that was isolated from soil.

mesophilic
16S sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Species	**Rhodococcus soli**
	Full Scientific Name (LPSN)	Rhodococcus soli Li et al. 2015

Synonym

Prescottella soli

Information on morphological and physiological properties Morphology

[Ref.: #69460]	Colony color	Colourless
[Ref.: #69460]	Cultivation medium used	ISP 4

[Ref.: #69460]	Colony color	Colourless
[Ref.: #69460]	Cultivation medium used	ISP 5

[Ref.: #69460]	Colony color	Colourless
[Ref.: #69460]	Cultivation medium used	ISP 7

[Ref.: #69460]	Colony color	Colourless
[Ref.: #69460]	Cultivation medium used	suter with tyrosine

[Ref.: #69460]	Colony color	Colourless
[Ref.: #69460]	Cultivation medium used	suter without tyrosine

[Ref.: #69460]	Colony color	Colourless
[Ref.: #69460]	Cultivation medium used	ISP 3

[Ref.: #69460]	Colony color	Sand yellow (1002)
[Ref.: #69460]	Cultivation medium used	ISP 2

[Ref.: #69460]	Colony color	Sand yellow (1002)
[Ref.: #69460]	Cultivation medium used	ISP 6

[Ref.: #69460]	Pigment production	no
[Ref.: #69460]	Pigment name	Melanin
[Ref.: #69460]	Pigment production	no
[Ref.: #69460]	Pigment name	soluble pigment

[Ref.: #69460]	Multicellular complex forming ability	no
[Ref.: #69460]	Multicellular complex name	Aerial mycelium
[Ref.: #69460]	Medium Name (multicellularity)	ISP 2

[Ref.: #69460]	Multicellular complex forming ability	no
[Ref.: #69460]	Multicellular complex name	Aerial mycelium
[Ref.: #69460]	Medium Name (multicellularity)	ISP 3

[Ref.: #69460]	Multicellular complex forming ability	no
[Ref.: #69460]	Multicellular complex name	Aerial mycelium
[Ref.: #69460]	Medium Name (multicellularity)	ISP 4

[Ref.: #69460]	Multicellular complex forming ability	no
[Ref.: #69460]	Multicellular complex name	Aerial mycelium
[Ref.: #69460]	Medium Name (multicellularity)	ISP 5

[Ref.: #69460]	Multicellular complex forming ability	no
[Ref.: #69460]	Multicellular complex name	Aerial mycelium
[Ref.: #69460]	Medium Name (multicellularity)	ISP 6

[Ref.: #69460]	Multicellular complex forming ability	no
[Ref.: #69460]	Multicellular complex name	Aerial mycelium
[Ref.: #69460]	Medium Name (multicellularity)	ISP 7

[Ref.: #69460]	Multicellular complex forming ability	no
[Ref.: #69460]	Multicellular complex name	Aerial mycelium
[Ref.: #69460]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69460]	Multicellular complex forming ability	no
[Ref.: #69460]	Multicellular complex name	Aerial mycelium
[Ref.: #69460]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #21760]

Caption:

Medium 553 28°C

[Ref.: #21760]

Intellectual property rights:

[Ref.: #69460]

Caption:

Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69460]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69460]

Caption:

Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69460]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21760]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #21760]

Culture medium growth

[Ref.: #21760]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21760]

Culture medium composition

expand / minimize

[Ref.: #21760]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #21760]

Culture medium growth

[Ref.: #21760]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21760]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21760]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #21760]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69460]		NaCl		growth	0-2.5	%

[Ref.: #67770]

Observation

quinones: MK-8(H₂), MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69460]	arabinose ChEBI	-	growth
[Ref.: #69460]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69460]	fructose ChEBI	-	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69460]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69460]	inositol ChEBI	+/-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69460]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69460]	raffinose ChEBI	+/-	growth
[Ref.: #69460]	rhamnose ChEBI	+/-	growth
[Ref.: #69460]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69460]	xylose ChEBI	+/-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69460]	3953	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69460]	6137	not determinedn.d.	+/-	-	-	+/-	+	+	+/-	+/-	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21760]	Sample type/isolated from	soil
[Ref.: #21760]	Geographic location (country and/or sea, region)	Kyoto Park (E135°46', N35°)
[Ref.: #21760]	Country	Japan
[Ref.: #21760]	Country ISO 3 Code	JPN
[Ref.: #21760]	Continent	Asia
[Ref.: #21760]	Geographic location	35.0000°/135.7670°

[Ref.: #67770]	Sample type/isolated from	Soil from Kyoto
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ939314 (>99% sequence identity) for Rhodococcus from Microbeatlas

Aquatic Samples	4265
Soil Samples	18366
Animal Samples	5588
Plant Samples	3054
Total Samples	31273

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21760]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21760]	Rhodococcus soli strain DSD51W 16S ribosomal RNA gene, partial sequence	KJ939314	1537	ENA	1543852 tax ID

[Ref.: #21760]	GC-content	68.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	66.8-70 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21760]

Culture collection no.

DSM 46662, JCM 19627, KACC 17838, KCTC 29259

[Ref.: #89013]

SI-ID 402984

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodococcus agglutinans sp. nov., an actinobacterium isolated from a soil sample.	Guo QQ, Ming H, Meng XL, Duan YY, Gao R, Zhang JX, Huang JR, Li WJ, Nie GX	Antonie Van Leeuwenhoek	10.1007/s10482-015-0421-7	2015	*
Phylogeny	Rhodococcus soli sp. nov., an actinobacterium isolated from soil using a resuscitative technique.	Li SH, Yu XY, Park DJ, Hozzein WN, Kim CJ, Shu WS, Wadaan MA, Ding LX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0334-x	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21760

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46662

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69460

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89013

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402984.1 )

* These data were automatically processed and therefore are not curated

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