Name: Aggregicoccus edonensis Ar1733
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130467

Type strain:

Species: Aggregicoccus edonensis

Strain Designation: Ar1733, MCy1366

Culture col. no.: DSM 27872, NCCB 100468

Strain history: <- S. Sood, HZI, Braunschweig, Germany; Ar1733 <- H. Reichenbach, HZI, Braunschweig, Germany

NCBI tax ID(s): 1450165 (species)

SI-ID 408236

DSM 27872

Special Collections

Section

Aggregicoccus edonensis Ar1733 is a bacterium that was isolated from soil.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Myxococcaceae*
	Genus	*Aggregicoccus*
	Species	**Aggregicoccus edonensis**
	Full Scientific Name (LPSN)	Aggregicoccus edonensis Sood et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #22145]

Incubation period

8-14 days

Multimedia content

[Ref.: #22145]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22145]

Culture medium

VY/2 AGAR (DSMZ Medium 9)

[Ref.: #22145]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #22145]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22145]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22145]	Sample type/isolated from	soil
[Ref.: #22145]	Geographic location (country and/or sea, region)	near Tokyo
[Ref.: #22145]	Country	Japan
[Ref.: #22145]	Country ISO 3 Code	JPN
[Ref.: #22145]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF767690 (>99% sequence identity) for Aggregicoccus edonensis subclade from Microbeatlas

Aquatic Samples	427
Soil Samples	3833
Animal Samples	157
Plant Samples	830
Total Samples	5247

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22145]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22145]	Aggregicoccus edonensis strain MCy1366 16S ribosomal RNA gene, partial sequence	KF767690	1531	GenBank ENA	1450165 tax ID

[Ref.: #22145]

GC-content

65.6 mol%

fluorimetric

Availability in culture collections External links

[Ref.: #22145]

Culture collection no.

DSM 27872, NCCB 100468

[Ref.: #88996]

SI-ID 408236

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Simulacricoccus ruber gen. nov., sp. nov., a microaerotolerant, non-fruiting, myxospore-forming soil myxobacterium and emended description of the family Myxococcaceae.	Garcia R, Muller R	Int J Syst Evol Microbiol	10.1099/ijsem.0.002936	2018	*
Phylogeny	Aggregicoccus edonensis gen. nov., sp. nov., an unusually aggregating myxobacterium isolated from a soil sample.	Sood S, Awal RP, Wink J, Mohr KI, Rohde M, Stadler M, Kampfer P, Glaeser SP, Schumann P, Garcia R, Muller R	Int J Syst Evol Microbiol	10.1099/ijs.0.061176-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22145

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27872

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88996

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408236.1 )

* These data were automatically processed and therefore are not curated

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