Name: Paraperlucidibaca wandonensis WT-RY4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130462

Type strain:

Species: Paraperlucidibaca wandonensis

Strain Designation: WT-RY4

Culture col. no.: DSM 29662, CCUG 63419, KCTC 32216

Strain history: <- KCTC <- J.-H. Yoon, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea

NCBI tax ID(s): 1268273 (species)

SI-ID 402278

DSM 29662, CCUG 63419

Special Collections

Section

Paraperlucidibaca wandonensis WT-RY4 is an aerobe, Gram-negative, motile bacterium that was isolated from wooden branch washed ashore the sea.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Paraperlucidibaca*
	Species	**Paraperlucidibaca wandonensis**
	Full Scientific Name (LPSN)	Paraperlucidibaca wandonensis Yoon et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30967]	Gram stain	negative

[Ref.: #30967]	Cell length	2.25 µm

[Ref.: #30967]	Cell width	0.3 µm

[Ref.: #30967]	Cell shape	rod-shaped

[Ref.: #30967]	Motility	yes

[Ref.: #62981]

Incubation period

5 days

[Ref.: #30967]

Pigment production

yes

Multimedia content

[Ref.: #22083]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22083]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22083]

Culture medium growth

[Ref.: #22083]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22083]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #22083]	growth	28 °C
[Ref.: #30967]	growth	04-30 °C
[Ref.: #30967]	optimum	25 °C
[Ref.: #62981]	growth	20 °C

	pH	Kind of pH		pH
[Ref.: #30967]			optimum	7.25
[Ref.: #30967]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30967]	Oxygen tolerance	aerobe
[Ref.: #62981]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30967]		NaCl		growth	0-2	%

[Ref.: #30967]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30967]	acetate ChEBI	+	carbon source
[Ref.: #30967]	nitrate ChEBI	+	reduction
[Ref.: #30967]	pyruvate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30967]	acid phosphatase	+	3.1.3.2
[Ref.: #30967]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30967]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30967]	catalase	+	1.11.1.6
[Ref.: #30967]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22083]	Sample type/isolated from	wooden branch washed ashore the sea
[Ref.: #22083]	Geographic location (country and/or sea, region)	Wando island
[Ref.: #22083]	Country	Republic of Korea
[Ref.: #22083]	Country ISO 3 Code	KOR
[Ref.: #22083]	Continent	Asia

[Ref.: #62981]	Sample type/isolated from	Wood Falls
[Ref.: #62981]	Sampling date	2011
[Ref.: #62981]	Geographic location (country and/or sea, region)	Wando
[Ref.: #62981]	Country	Republic of Korea
[Ref.: #62981]	Country ISO 3 Code	KOR
[Ref.: #62981]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast
#Host Body-Site	#Plant	#Stem (Branch)
#Host Body Product	#Plant	#Timber

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX994294 (>99% sequence identity) for Paraperlucidibaca wandonensis from Microbeatlas

Aquatic Samples	675
Soil Samples	20
Animal Samples	110
Plant Samples	17
Total Samples	822

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22083]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22083]	Paraperlucidibaca wandonensis strain WT-RY4 16S ribosomal RNA gene, partial sequence	JX994294	1459	GenBank ENA	1268273 tax ID

[Ref.: #22083]

GC-content

52.4 mol%

Availability in culture collections External links

[Ref.: #22083]

Culture collection no.

DSM 29662, CCUG 63419, KCTC 32216

[Ref.: #88991]

SI-ID 402278

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amnimonas aquatica gen. nov., sp. nov., Isolated from a Freshwater River.	Lee Y, Park HY, Jeon CO	Curr Microbiol	10.1007/s00284-019-01652-5	2019	*
Phylogeny	Paraperlucidibaca wandonensis sp. nov., isolated from seawater, and emended description of the genus Paraperlucidibaca Oh et al. 2011.	Yoon JH, Park S, Jung YT, Lee JS, Lee KC	Int J Syst Evol Microbiol	10.1099/ijs.0.048645-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22083

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29662

#30967

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27297 (see below)

#62981 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63419

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88991

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402278.1 )

#27297

IJSEM 4113 2013 ( DOI 10.1099/ijs.0.048645-0 , PubMed 23749278 )

* These data were automatically processed and therefore are not curated

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