Name: Micromonospora taraxaci NEAU-P5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130444

Type strain:

Species: Micromonospora taraxaci

Strain Designation: NEAU-P5

Culture col. no.: DSM 45885, CGMCC 4.7098, JCM 31775

Strain history: CGMCC 4.7098 <-- C. Liu; Northeast Agric. Univ., China; NEAU-P5.

NCBI tax ID(s): 1316803 (species)

SI-ID 404358

DSM 45885

Special Collections

DSMZ
JCM

Section

Micromonospora taraxaci NEAU-P5 is a spore-forming, Gram-positive bacterium that was isolated from root of dandelion .

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora taraxaci**
	Full Scientific Name (LPSN)	Micromonospora taraxaci Zhao et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.408

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #21677]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21677]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.883

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Observation

quinones: MK-9(H₈), MK-9(H₆), MK-10(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21677]	Sample type/isolated from	root of dandelion (Taraxacum mongolicum Hand.-Mazz.)
[Ref.: #21677]	Host species	Taraxacum mongolicum
[Ref.: #21677]	Geographic location (country and/or sea, region)	Heilongjiang province, Harbin (45°45'N, 126°41'E)
[Ref.: #21677]	Country	China
[Ref.: #21677]	Country ISO 3 Code	CHN
[Ref.: #21677]	Continent	Asia
[Ref.: #21677]	Geographic location	45.7500°/126.6830°

[Ref.: #67770]	Sample type/isolated from	Root of dandelion (Taraxacum mongolicum Hand.-Mazz.) from Harbin
[Ref.: #67770]	Host species	Taraxacum mongolicum
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

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Global distribution of 16S sequence LC278354 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	161
Soil Samples	1017
Animal Samples	219
Plant Samples	22
Total Samples	1419

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21677]	Micromonospora taraxaci strain NEAU-P5 16S ribosomal RNA gene, partial sequence	KC439463	1509	GenBank ENA	1316803 tax ID
[Ref.: #67770]	Micromonospora taraxaci gene for 16S ribosomal RNA, partial sequence, strain: JCM 31775	LC278354	1459	GenBank ENA	1316803 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Micromonospora taraxaci DSM 45885	GCA_007830095	contig	GenBank ENA	1316803 tax ID	*
[Ref.: #66792]	Micromonospora taraxaci strain DSM 45885	1316803.3	wgs	PATRIC	1316803 tax ID	*
[Ref.: #66792]	Micromonospora taraxaci DSM 45885	2818991475	draft	JGI IMG/M	1316803 tax ID	*

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GC-content

68.05-68.55 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora taraxaci strain DSM 45885 PATRIC: 1316803.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora taraxaci strain DSM 45885 PATRIC: 1316803.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.408	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.33	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.883	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.271	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

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Culture collection no.

DSM 45885, CGMCC 4.7098, JCM 31775

[Ref.: #88972]

SI-ID 404358

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora orduensis sp. nov., isolated from deep marine sediment.	Veyisoglu A, Carro L, Cetin D, Igual JM, Klenk HP, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-019-01349-6	2019	*
Phylogeny	Micromonospora parathelypteridis sp. nov., an endophytic actinomycete with antifungal activity isolated from the root of Parathelypteris beddomei (Bak.) Ching.	Zhao S, Liu C, Zheng W, Ma Z, Cao T, Zhao J, Yan K, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001614	2017	*
Phylogeny	Micromonospora taraxaci sp. nov., a novel endophytic actinomycete isolated from dandelion root (Taraxacum mongolicum Hand.-Mazz.).	Zhao J, Guo L, He H, Liu C, Zhang Y, Li C, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0237-x	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21677

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45885

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88972

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404358.1 )

* These data were automatically processed and therefore are not curated

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Micromonospora taraxaci strain DSM 45885

Micromonospora taraxaci strain DSM 45885

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