Dactylosporangium cerinum (DSM 46712, CGMCC 4.7152, NEAU-TPG4)

Name: Dactylosporangium cerinum (DSM 46712, CGMCC 4.7152, NEAU-TPG4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130442

Type strain

Strain Designation NEAU-TPG4

Culture col. no. DSM 46712 CGMCC 4.7152 NEAU-TPG4 JCM 31767

NCBI tax ID(s) 1434730

Special Collections DSMZ JCM Wink compendium

History DSMZ <- C. Liu, School of Life Science,Harbin,China; NEAU-TPG4 JCM <-- CGMCC 4.7152 <-- C. Liu; Northeast Agric. Univ., China; NEAU-TPG4.

Links

Dactylosporangium cerinum NEAU-TPG4 is a bacterium that was isolated from rhizosphere soil of Pinus koraiensis Sieb. et Zucc..

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405462

JCM 31767,DSM 46712

@ref 20215

Last LPSN update 2026-05-29 08:37:22

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Dactylosporangium

Species Dactylosporangium cerinum

Full scientific name Dactylosporangium cerinum Liu et al. 2015

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		95.481
125439		99.949	positive

Colony morphology

@ref	Colony color	Medium used
69464	Daffodil yellow (1007)	ISP 2
69464	Ivory (1014)	ISP 6
69464	Ivory (1014), golden yellow (1024)	suter with tyrosine
69464	Ivory (1014), golden yellow (1024)	suter without tyrosine
69464	Light ivory (1015)	ISP 5
69464	Light ivory (1015), ochre yellow (1024)	ISP 7
69464	Pastel yellow (1034)	ISP 3
69464	Saffron yellow (1017)	ISP 4

Multicellular morphology

@ref	Complex name	Medium name
69464	Aerial mycelium	ISP 2
69464	Aerial mycelium	ISP 3
69464	Aerial mycelium	ISP 4
69464	Aerial mycelium	ISP 5
69464	Aerial mycelium	ISP 6
69464	Aerial mycelium	ISP 7
69464	Aerial mycelium	suter with tyrosine
69464	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Production	Color	Name
69464			melanin pigment
69464		Golden yellow (1004), beige (1001)	soluble pigment

Multimedia

@ref:	21568
multimedia content:	DSM_46712.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46712.jpg
caption:	Medium 554 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
21568	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
21568	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21568	CZAPEK PEPTONE AGAR (DSMZ Medium 83)	Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21568	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.025

Spore formation

@ref	Spore formation	Confidence
125439		97.145

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69464	NaCl	positive	growth	0 %

Observation

67770

Observationquinones: MK-9(H₈), MK-9(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69464	22599 ChEBI	arabinose	+	growth
69464	62968 ChEBI	cellulose	+/-	growth
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	+	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	+	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
69464	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
69464	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69464	37684 ChEBI	mannose	+	growth
69464	17268 ChEBI	myo-inositol	+/-	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69464	16634 ChEBI	raffinose	+	growth
69464	26546 ChEBI	rhamnose	+	growth
69464	17992 ChEBI	sucrose	+	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69464	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69464	-	+	-	-	-	-	+	+/-	+	-	-	not determinedn.d.	+	-	+	+	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69464	not determinedn.d.	+	+/-	+/-	-	+	+/-	-	+	-	+	+/-	+/-	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
21568	rhizosphere soil of Pinus koraiensis Sieb. et Zucc.	Pinus koraiensis	Heilongjiang Province, Luobei (48°8' N, 130°40'E)	China	CHN	Asia	48.1333	130.667 48.1333/130.667
67770	Rhizosphere soil of Pinus koraiensis Sieb. et Zucc. from Luobei	Pinus koraiensis	Heilongjiang Province, north China	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KF928748 (>99% sequence identity) for Dactylosporangium from Microbeatlas

Aquatic Samples	58
Soil Samples	1581
Animal Samples	75
Plant Samples	21
Total Samples	1735

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21568	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265362v1 assembly for Dactylosporangium cerinum CGMCC 4.7152	scaffold	GCA_042653625	1434730	29.52

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21568	Dactylosporangium cerinum strain NEAU-TPG4 16S ribosomal RNA gene, partial sequence	KF928748	1509		1434730

GC content

@ref	GC-content (mol%)	Method
21568	71.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4265362v1 assembly for Dactylosporangium cerinum CGMCC 4.7152
NCBI: GCA_042653625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	99.95	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.03	no
125439	motility	BacteriaNetⓘ	no	95.48	no
125439	spore_formation	BacteriaNetⓘ	yes	97.15	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dactylosporangium cerinum sp. nov., a novel actinobacterium isolated from the rhizosphere of Pinus koraiensis Sieb. et Zucc.	Liu C, Guan X, Jin P, Li J, Li Y, Li L, Zhou Y, Shen Y, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0478-3	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21568	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46712
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69464	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dactylosporangium cerinum (DSM 46712, CGMCC 4.7152, NEAU-TPG4)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042653625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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