Name: Nesterenkonia populi GP10-3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130435

Type strain:

Species: Nesterenkonia populi

Strain Designation: GP10-3

Culture col. no.: DSM 27959, JCM 31979, KCTC 29119

Strain history: <- Cheng-hang Sun, Institute of Medicinal Biotechnology, China

NCBI tax ID(s): 1591087 (species)

SI-ID 400528

DSM 27959

Special Collections

Section

Nesterenkonia populi GP10-3 is an aerobe, Gram-positive bacterium that was isolated from plant, bark sample of Populus euphratica.

Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Nesterenkonia*
	Species	**Nesterenkonia populi**
	Full Scientific Name (LPSN)	Nesterenkonia populi Liu et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21687]

Culture medium

MODIFIED BACTO MARINE BROTH (DSMZ Medium 514d)

[Ref.: #21687]

Culture medium growth

[Ref.: #21687]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21687]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21687]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-8, MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21687]	Sample type/isolated from	plant, bark sample of Populus euphratica
[Ref.: #21687]	Host species	Populus euphratica
[Ref.: #21687]	Geographic location (country and/or sea, region)	Xinjiang, Taklimakan desert
[Ref.: #21687]	Country	China
[Ref.: #21687]	Country ISO 3 Code	CHN
[Ref.: #21687]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Bark of Populus euphratica on the southern edge of the Taklimakan Desert
[Ref.: #67770]	Host species	Populus euphratica
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From Plant
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP057085 (>99% sequence identity) for Nesterenkonia populi subclade from Microbeatlas

Aquatic Samples	13
Soil Samples	18
Animal Samples	158
Plant Samples	23
Total Samples	212

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21687]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21687]	Nesterenkonia populi strain GP10-3 16S ribosomal RNA gene, partial sequence	KP057085	1481	GenBank ENA	1591087 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nesterenkonia populi DSM 27959	GCA_007994735	contig	GenBank ENA	1591087 tax ID	*
[Ref.: #66792]	Nesterenkonia populi strain DSM 27959	1591087.3	wgs	PATRIC	1591087 tax ID	*

[Ref.: #21687]

GC-content

67.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nesterenkonia populi strain DSM 27959 PATRIC: 1591087.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nesterenkonia populi strain DSM 27959 PATRIC: 1591087.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.924	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.703	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	75.379	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.592	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	87.167	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	74.167	no

Availability in culture collections External links

[Ref.: #21687]

Culture collection no.

DSM 27959, JCM 31979, KCTC 29119

[Ref.: #88965]

SI-ID 400528

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nesterenkonia ebinurensis sp. nov., a Novel Actinobacterium Isolated From Populus euphratica.	Anwar N, Ye Y, Chen C, Mamtimin T, Wang R, Rahman E, Wu M	Curr Microbiol	10.1007/s00284-021-02597-4	2021	*
Phylogeny	Nesterenkonia sedimenti sp. nov., isolated from marine sediment.	Xie F, Pei S, Zhang Y, Tian Y, Zhang G	Arch Microbiol	10.1007/s00203-021-02596-w	2021	*
Phylogeny	Nesterenkonia populi sp. nov., an actinobacterium isolated from Populus euphratica.	Liu JM, Tuo L, Habden X, Guo L, Jiang ZK, Liu XF, Chen L, Zhang YQ, Sun CH	Int J Syst Evol Microbiol	10.1099/ijs.0.000123	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21687

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27959

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88965

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400528.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Nesterenkonia populi in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Nesterenkonia populi strain DSM 27959

Nesterenkonia populi strain DSM 27959

Change proposal

Change proposal