Nesterenkonia massiliensis (DSM 26221, CSUR P244, NP1)

Name: Nesterenkonia massiliensis (DSM 26221, CSUR P244, NP1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130434

Type strain

Strain Designation NP1

Culture col. no. DSM 26221 CSUR P244 NP1

NCBI tax ID(s) 1232429

Special Collections DSMZ

History DSMZ <- J.-C. Lagier, Timone Hospital, Marseille, France; NP1

Links

Nesterenkonia massiliensis NP1 is a bacterium that was isolated from human feces, 32-year-old woman suffering from AIDS.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402459

DSM 26221

@ref 20215

Last LPSN update 2026-05-29 08:37:22

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Nesterenkonia

Species Nesterenkonia massiliensis

Full scientific name Nesterenkonia massiliensis Edouard et al. 2016

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21686	BHI MEDIUM (DSMZ Medium 215)		Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21686	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	92.939

Spore formation

@ref	Spore formation	Confidence
125439		94.658

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host	#Human	#Female
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
21686	human feces, 32-year-old woman suffering from AIDS	Homo sapiens	Marseille	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence JX424770 (>99% sequence identity) for Nesterenkonia from Microbeatlas

Aquatic Samples	167
Soil Samples	81
Animal Samples	1013
Plant Samples	15
Total Samples	1276

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21686	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Nm_NP1 assembly for Nesterenkonia massiliensis NP1	scaffold	GCA_000455245	1232429.3	2602041911	1232429	37.65

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21686	Nesterenkonia massiliensis strain NP1 16S ribosomal RNA gene, partial sequence	JX424770	1433		1232429

GC content

@ref	GC-content (mol%)	Method
21686	62.47	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nm_NP1 assembly for Nesterenkonia massiliensis NP1
NCBI: GCA_000455245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.94	no
125439	motility	BacteriaNetⓘ	no	64.43	no
125439	gram_stain	BacteriaNetⓘ	positive	49.69	no
125439	spore_formation	BacteriaNetⓘ	no	94.66	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nesterenkonia massiliensis NP1
NCBI: GCA_000455245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.12	no
125438	anaerobic	anaerobicⓘ	no	94.41	no
125438	aerobic	aerobicⓘ	yes	78.76	no
125438	spore-forming	spore-formingⓘ	no	78.52	no
125438	thermophilic	thermophileⓘ	no	93.25	no
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence and description of Nesterenkonia massiliensis sp. nov. strain NP1(T.).	Edouard S, Sankar S, Dangui NP, Lagier JC, Michelle C, Raoult D, Fournier PE.	Stand Genomic Sci	10.4056/sigs.5631022	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21686	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26221
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nesterenkonia massiliensis (DSM 26221, CSUR P244, NP1)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000455245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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