Name: Nesterenkonia massiliensis NP1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130434

Type strain:

Species: Nesterenkonia massiliensis

Strain Designation: NP1

Culture col. no.: DSM 26221, CSUR P244

Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; NP1

NCBI tax ID(s): 1232429 (species)

SI-ID 402459

DSM 26221

Section

Nesterenkonia massiliensis NP1 is a mesophilic bacterium that was isolated from human feces, 32-year-old woman suffering from AIDS.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Nesterenkonia*
	Species	**Nesterenkonia massiliensis**
	Full Scientific Name (LPSN)	Nesterenkonia massiliensis Edouard et al. 2016

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21686]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #21686]

Culture medium growth

[Ref.: #21686]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21686]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21686]			growth	30 °C

[Ref.: #21686]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21686]	Sample type/isolated from	human feces, 32-year-old woman suffering from AIDS
[Ref.: #21686]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #21686]	Country	France
[Ref.: #21686]	Country ISO 3 Code	FRA
[Ref.: #21686]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Human	#Female
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX424770 (>99% sequence identity) for Nesterenkonia from Microbeatlas

Aquatic Samples	167
Soil Samples	81
Animal Samples	1013
Plant Samples	15
Total Samples	1276

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21686]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21686]	Nesterenkonia massiliensis strain NP1 16S ribosomal RNA gene, partial sequence	JX424770	1433	ENA	1232429 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nesterenkonia massiliensis NP1	GCA_000455245	scaffold	GenBank	1232429 tax ID	*
[Ref.: #66792]	Nesterenkonia massiliensis NP1	2602041911	draft	JGI IMG/M	1232429 tax ID	*

[Ref.: #21686]

GC-content

62.47 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nesterenkonia massiliensis NP1 NCBI: GCA_000455245.1
[Ref.: #69480]	motile	no	89.589	no
[Ref.: #69480]	flagellated	no	96.632	no
[Ref.: #69480]	gram-positive	yes	91.164	no
[Ref.: #69480]	anaerobic	no	99.025	no
[Ref.: #69480]	aerobic	yes	93.509	no
[Ref.: #69480]	halophile	yes	75.267	no
[Ref.: #69480]	spore-forming	no	93.86	no
[Ref.: #69480]	thermophile	no	97.882	no
[Ref.: #69480]	glucose-util	yes	88.374	no
[Ref.: #69480]	glucose-ferment	no	82.779	no

Availability in culture collections External links

[Ref.: #21686]

Culture collection no.

DSM 26221, CSUR P244

[Ref.: #88964]

SI-ID 402459

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21686

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26221

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88964

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402459.1 )

* These data were automatically processed and therefore are not curated

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