Pseudarthrobacter niigatensis (DSM 28855, CCTCC AB 206012, IAM 15382)

Name: Pseudarthrobacter niigatensis (DSM 28855, CCTCC AB 206012, IAM 15382)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130419

Type strain

Strain Designation LC4

Culture col. no. DSM 28855 CCTCC AB 206012 IAM 15382 JCM 30147 LC4 1 more

NCBI tax ID(s) 369935

Special Collections DSMZ JCM Literature strains

Links

Pseudarthrobacter niigatensis LC4 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from filtration substrate from volcanic rock.

Gram-positive rod-shaped aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 407566

JCM 30147,DSM 28855

@ref 20215

Last LPSN update 2025-12-16 10:00:59

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Pseudarthrobacter

Species Pseudarthrobacter niigatensis

Full scientific name Pseudarthrobacter niigatensis (Ding et al. 2009) Busse 2016

Synonyms (1)

Arthrobacter niigatensis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
32315	positive	rod-shaped

Pigmentation

32315

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21482	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21482	positive	growth	28	mesophilic
32315	positive	growth	05-40
32315	positive	optimum	30	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH
32315	positive	optimum	7.5
32315	positive	growth	06-11

Physiology and metabolism

Oxygen tolerance

32315

Oxygen toleranceaerobe

Spore formation

32315

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32315	NaCl	positive	growth	03-07 %

Observation

67770

Observationquinones: MK-9(H₂), MK-8(H₂), MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32315	5291 ChEBI	gelatin	+	carbon source
32315	17234 ChEBI	glucose	+	carbon source
32315	28087 ChEBI	glycogen	+	carbon source
32315	17716 ChEBI	lactose	+	carbon source
32315	29864 ChEBI	mannitol	+	carbon source
32315	17632 ChEBI	nitrate	+	reduction
32315	33942 ChEBI	ribose	+	carbon source
32315	17992 ChEBI	sucrose	+	carbon source
32315	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32315	acid phosphatase	+	3.1.3.2
32315	alkaline phosphatase	+	3.1.3.1
32315	catalase	+	1.11.1.6
32315	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Volcanic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21482	filtration substrate from volcanic rock	Niigata	Japan	JPN	Asia
67770	Filtration substrate made from volcanic rock from Niigata		Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21482	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21482	Arthrobacter niigatensis gene for 16S rRNA, partial sequence	AB248526	1461		369935

GC content

@ref	GC-content (mol%)
32315	70.8
67770	70.8

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Four novel Arthrobacter species isolated from filtration substrate.	Ding L, Hirose T, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65301-0	2009
Phylogeny	Arthrobacter enclensis sp. nov., isolated from sediment sample.	Dastager SG, Liu Q, Tang SK, Krishnamurthi S, Lee JC, Li WJ	Arch Microbiol	10.1007/s00203-014-1016-9	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21482	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28855
#32315	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28552 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudarthrobacter niigatensis (DSM 28855, CCTCC AB 206012, IAM 15382)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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