Name: Pseudarthrobacter niigatensis LC4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130419

Type strain:

Species: Pseudarthrobacter niigatensis

Strain Designation: LC4

Culture col. no.: DSM 28855, CCTCC AB 206012, IAM 15382, JCM 30147, JCM 21826

Strain history: CCTCC AB 206012 <-- L. Ding and A. Yokota; IAM, Japan; LC4.

NCBI tax ID(s): 369935 (species)

SI-ID 407566

DSM 28855

Section

Pseudarthrobacter niigatensis LC4 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from filtration substrate from volcanic rock.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Pseudarthrobacter*
	Species	**Pseudarthrobacter niigatensis**
	Full Scientific Name (LPSN)	Pseudarthrobacter niigatensis (Ding et al. 2009) Busse 2016

Synonym

Arthrobacter niigatensis

Information on morphological and physiological properties Morphology

[Ref.: #32315]	Gram stain	positive

[Ref.: #32315]	Cell shape	rod-shaped

[Ref.: #32315]	Motility	no

[Ref.: #32315]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21482]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #21482]

Culture medium growth

[Ref.: #21482]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21482]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21482]	growth	28 °C
[Ref.: #32315]	growth	05-40 °C
[Ref.: #32315]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #21482]	Temperature range	mesophilic
[Ref.: #32315]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32315]			optimum	7.5
[Ref.: #32315]			growth	06-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32315]

Oxygen tolerance

aerobe

[Ref.: #32315]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32315]		NaCl		growth	03-07	%

[Ref.: #67770]

Observation

quinones: MK-9(H₂), MK-8(H₂), MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32315]	gelatin ChEBI	+	carbon source
[Ref.: #32315]	glucose ChEBI	+	carbon source
[Ref.: #32315]	glycogen ChEBI	+	carbon source
[Ref.: #32315]	lactose ChEBI	+	carbon source
[Ref.: #32315]	mannitol ChEBI	+	carbon source
[Ref.: #32315]	nitrate ChEBI	+	reduction
[Ref.: #32315]	ribose ChEBI	+	carbon source
[Ref.: #32315]	sucrose ChEBI	+	carbon source
[Ref.: #32315]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32315]	acid phosphatase	+	3.1.3.2
[Ref.: #32315]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32315]	catalase	+	1.11.1.6
[Ref.: #32315]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21482]	Sample type/isolated from	filtration substrate from volcanic rock
[Ref.: #21482]	Geographic location (country and/or sea, region)	Niigata
[Ref.: #21482]	Country	Japan
[Ref.: #21482]	Country ISO 3 Code	JPN
[Ref.: #21482]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Filtration substrate made from volcanic rock from Niigata
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Volcanic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21482]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21482]	Arthrobacter niigatensis gene for 16S rRNA, partial sequence	AB248526	1461	ENA	369935 tax ID

[Ref.: #32315]	GC-content	70.8 mol%
[Ref.: #67770]	GC-content	70.8 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21482]

Culture collection no.

DSM 28855, CCTCC AB 206012, IAM 15382, JCM 30147, JCM 21826

[Ref.: #88951]

SI-ID 407566

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter enclensis sp. nov., isolated from sediment sample.	Dastager SG, Liu Q, Tang SK, Krishnamurthi S, Lee JC, Li WJ	Arch Microbiol	10.1007/s00203-014-1016-9	2014	*
Phylogeny	Four novel Arthrobacter species isolated from filtration substrate.	Ding L, Hirose T, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65301-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21482

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28855

#32315

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28552 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#88951

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407566.1 )

#28552

IJSEM 856 2009 ( DOI 10.1099/ijs.0.65301-0 , PubMed 19329620 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pseudarthrobacter niigatensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF