Name: Labedella endophytica DSM 28746
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130416

Type strain:

Species: Labedella endophytica

Culture col. no.: DSM 28746, CPCC 203961, JCM 30092, KCTC 29494, EGI 6500705

Strain history: <- Wenjun Li, EGI 6500705

NCBI tax ID(s): 1523160 (species)

SI-ID 401638

DSM 28746

Section

Labedella endophytica DSM 28746 is an aerobe, mesophilic bacterium that was isolated from stem of a healthy halophyte sample of Anabasis eliator Schischk.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Labedella*
	Species	**Labedella endophytica**
	Full Scientific Name (LPSN)	Labedella endophytica Wang et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22059]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #22059]

Culture medium growth

[Ref.: #22059]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22059]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #22059]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #22059]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: MK-9, MK-10, MK-11

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22059]	Sample type/isolated from	stem of a healthy halophyte sample of Anabasis eliator (C. A. Mey.) Schischk
[Ref.: #22059]	Host species	Anabasis elatior
[Ref.: #22059]	Geographic location (country and/or sea, region)	Xinjiang Province, Urumqi
[Ref.: #22059]	Country	China
[Ref.: #22059]	Country ISO 3 Code	CHN
[Ref.: #22059]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Stem of a healthy halophyte Anabasis elatior (C. A. Mey.) Schischk
[Ref.: #67770]	Host species	Anabasis elatior
[Ref.: #67770]	Geographic location (country and/or sea, region)	suburban district of Urumqi, Xinjiang Province, north-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	Plant
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Stem (Branch)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22059]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22059]	Labedella endophytica strain EGI 6500705 16S ribosomal RNA gene, partial sequence	KM095501	1542	ENA	1523160 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Labedella endophytica EGI 6500705	GCA_003990045	contig	GenBank	1523160 tax ID

[Ref.: #22059]

GC-content

69.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Labedella endophytica EGI 6500705 NCBI: GCA_003990045.1
[Ref.: #69480]	motile	no	88.059	no
[Ref.: #69480]	flagellated	no	96.923	no
[Ref.: #69480]	gram-positive	yes	92.225	no
[Ref.: #69480]	anaerobic	no	99.291	yes
[Ref.: #69480]	aerobic	yes	92.119	yes
[Ref.: #69480]	halophile	no	90.547	no
[Ref.: #69480]	spore-forming	no	91.123	no
[Ref.: #69480]	thermophile	no	99.722	no
[Ref.: #69480]	glucose-util	yes	87.55	no
[Ref.: #69480]	glucose-ferment	no	87.616	no

Availability in culture collections External links

[Ref.: #22059]

Culture collection no.

DSM 28746, CPCC 203961, JCM 30092, KCTC 29494, EGI 6500705

[Ref.: #88948]

SI-ID 401638

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Labedella phragmitis sp. nov. and Labedella populi sp. nov., two endophytic actinobacteria isolated from plants in the Taklamakan Desert and emended description of the genus Labedella.	Li FN, Lu Q, Liao SL, Jin T, Li W, Sun CH	Syst Appl Microbiol	10.1016/j.syapm.2019.126004	2019	*
Phylogeny	Labedella endophytica sp. nov., a novel endophytic actinobacterium isolated from stem of Anabasis elatior (C. A. Mey.) Schischk.	Wang HF, Zhang YG, Cheng J, Hozzein WN, Liu WH, Li L, Chen JY, Guo JW, Zhang YM, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0307-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22059

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28746

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88948

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401638.1 )

* These data were automatically processed and therefore are not curated

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Labedella endophytica EGI 6500705

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