Name: Microbacterium shaanxiense CCNWSP5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130414

Type strain:

Species: Microbacterium shaanxiense

Strain Designation: CCNWSP5, CCNWSP60

Culture col. no.: DSM 28301, ACCC 19329, JCM 30164, CIP 110973

Strain history: CIP <- 2015, S. Peng, Northwest A&F Univ., Yangling, Shaanxi, China: strain CCNWSP60

NCBI tax ID(s): 1507331 (species)

SI-ID 398596

DSM 28301

Other strains from Microbacterium shaanxiense

M. shaanxiense JCM 28790
M. shaanxiense JCM 28792
M. shaanxiense JCM 28808
M. shaanxiense JCM 28818
M. shaanxiense JCM 28833
M. shaanxiense JCM 28870
M. shaanxiense JCM 28871

Section

Microbacterium shaanxiense CCNWSP5 is a mesophilic, Gram-positive, rod-shaped bacterium that was isolated from root nodule surface of soybean [Glycine max Merrill] cultivar Zhonghuang 13.

Gram-positive
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium shaanxiense**
	Full Scientific Name (LPSN)	Microbacterium shaanxiense Peng et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #122576]	Gram stain	positive

[Ref.: #122576]	Cell shape	rod-shaped

[Ref.: #122576]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41780]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41780]

Culture medium growth

[Ref.: #41780]

Culture medium composition

expand / minimize

[Ref.: #21667]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #21667]

Culture medium growth

[Ref.: #21667]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21667]

Culture medium composition

expand / minimize

[Ref.: #122576]

Culture medium

CIP Medium 72

[Ref.: #122576]

Culture medium growth

[Ref.: #122576]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #21667]	growth	28 °C
[Ref.: #41780]	growth	25 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #21667]	Temperature range	mesophilic
[Ref.: #41780]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-13, MK-12

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21667]	Sample type/isolated from	root nodule surface of soybean [Glycine max (L.) Merrill] cultivar Zhonghuang 13
[Ref.: #21667]	Host species	Glycine max
[Ref.: #21667]	Geographic location (country and/or sea, region)	Shaanxi Province, Yangling (34° 16' N 108° 4' E)
[Ref.: #21667]	Country	China
[Ref.: #21667]	Country ISO 3 Code	CHN
[Ref.: #21667]	Continent	Asia
[Ref.: #21667]	Geographic location	34.2667°/108.0670°

[Ref.: #67770]	Sample type/isolated from	Nodule surface of soybean [Glycine max (L.) Merrill] cultivar Zhonghuang 13
[Ref.: #67770]	Host species	Glycine max
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shaanxi Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #122576]	Sample type/isolated from	Nodule surface of soybean cultivar Zhonghuang 13
[Ref.: #122576]	Geographic location (country and/or sea, region)	Yangling, Shaanxi province
[Ref.: #122576]	Country	China
[Ref.: #122576]	Country ISO 3 Code	CHN
[Ref.: #122576]	Continent	Asia
[Ref.: #122576]	Isolation date	2009-06-01
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21667]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122576]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21667]	Microbacterium shaanxiense strain CCNWSP60 16S ribosomal RNA gene, partial sequence	KJ735510	1425	ENA	1507331 tax ID

[Ref.: #21667]

GC-content

67.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21667]

Culture collection no.

DSM 28301, ACCC 19329, JCM 30164, CIP 110973

[Ref.: #88946]

SI-ID 398596

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium shaanxiense sp. nov., isolated from the nodule surface of soybean.	Peng S, Dongying L, Bingxin Y, Mingjun L, Gehong W	Int J Syst Evol Microbiol	10.1099/ijs.0.000116	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21667

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28301

#41780 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#88946

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398596.1 )

#122576 Collection of Institut Pasteur ; Curators of the CIP; CIP 110973
* These data were automatically processed and therefore are not curated

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