Fictibacillus nanhaiensis (DSM 23009, KCTC 13712, JSM 082006)

Name: Fictibacillus nanhaiensis (DSM 23009, KCTC 13712, JSM 082006)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1304

Type strain

Culture col. no. DSM 23009 KCTC 13712 JSM 082006

NCBI tax ID(s) 742169

Special Collections DSMZ KCTC Literature strains

History <- S.-K. Tang and Y.-G. Chen, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; JSM 082006 <- Y.-G. Chen and Q.-H. Chen <- S-K Tang, Yunnan Inst., China

Links

Fictibacillus nanhaiensis DSM 23009 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from oyster.

spore-forming Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 377068

DSM 23009,KCTC 13712

@ref 20215

Last LPSN update 2026-02-09 11:18:04

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Fictibacillus

Species Fictibacillus nanhaiensis

Full scientific name Fictibacillus nanhaiensis (Chen et al. 2011) Glaeser et al. 2013

Synonyms (1)

Bacillus nanhaiensis

BacDive ID	Other strains from **Fictibacillus nanhaiensis** (1)	Type strain
156873	F. nanhaiensis CCUG 66229

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
29858	positive	5 µm	0.5 µm	rod-shaped
67771				rod-shaped
67771	positive

Pigmentation

29858

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16649	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l MnSO4 0.01 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16649	positive	growth	28
29858	positive	growth	15-45
29858	positive	optimum	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
29858	positive	optimum	8
29858	positive	growth	6-10.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29858	aerobe
67771	aerobe
125439	obligate aerobe	95.6

Spore formation

@ref	Type of spore	Confidence
29858
67771	endospore
125438		95.592

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29858	NaCl	positive	growth	0-18 %
29858	NaCl	positive	optimum	2.25 %

Observation

@ref	Observation
29858	aggregates in chains
67771	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29858	16449 ChEBI	alanine	+	carbon source
29858	23652 ChEBI	dextrin	+	carbon source
29858	4853 ChEBI	esculin	+	hydrolysis
29858	17234 ChEBI	glucose	+	carbon source
29858	27570 ChEBI	histidine	+	carbon source
29858	17306 ChEBI	maltose	+	carbon source
29858	29864 ChEBI	mannitol	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29858	acid phosphatase	+	3.1.3.2
29858	alkaline phosphatase	+	3.1.3.1
29858	alpha-galactosidase	+	3.2.1.22
29858	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16649	oyster	Guangdong Province, Naozhou Island	China	CHN	Asia
67771	From homogenates of an oyster, invertebrate	Naozhou Island, South China Sea, Guangdong Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence GU477780 (>99% sequence identity) for Fictibacillus from Microbeatlas

Aquatic Samples	5486
Soil Samples	12226
Animal Samples	4217
Plant Samples	1938
Total Samples	23867

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16649	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4268638v1 assembly for Fictibacillus nanhaiensis KCTC 13712	contig	GCA_042686385			742169	74.43
124043	ASM1705251v1 assembly for Fictibacillus nanhaiensis DSM 23009	contig	GCA_017052515	742169.4	8116574144	742169	70.79
124043	ASM1640134v1 assembly for Fictibacillus nanhaiensis KCTC 13712	scaffold	GCA_016401345	742169.3	8117771119	742169	48.01

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16649	Fictibacillus nanhaiensis strain JSM 082006 16S ribosomal RNA gene, partial sequence	GU477780	1429		742169
124043	Bacillus nanhaiensis strain JSM 082006 16S ribosomal RNA gene, partial sequence.	HM054468	660		742169

GC content

@ref	GC-content (mol%)	Method
16649	40.2	high performance liquid chromatography (HPLC)
29858	40.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Fictibacillus nanhaiensis strain DSM 23009
PATRIC: 742169.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	88.70	no
125439	motility	BacteriaNetⓘ	yes	78.70	no
125439	gram_stain	BacteriaNetⓘ	variable	65.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Fictibacillus nanhaiensis strain DSM 23009
PATRIC: 742169.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	81.46	yes
125438	anaerobic	anaerobicⓘ	no	95.81	no
125438	spore-forming	spore-formingⓘ	yes	95.59	no
125438	aerobic	aerobicⓘ	yes	78.24	yes
125438	thermophilic	thermophileⓘ	no	93.21	yes
125438	flagellated	motile2+ⓘ	yes	85.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	A new biosurfactant-producing strain, Fictibacillus nanhaiensis ME46, isolated from an oil field in China.	Li JY, Liu YF, Zhou L, Gang HZ, Liu JF, Sun GZ, Wang WD, Yang SZ, Mu BZ.	Environ Technol	10.1080/09593330.2023.2240947	2024
	Native Cultivable Bacteria from the Blueberry Microbiome as Novel Potential Biocontrol Agents.	Chacon FI, Sineli PE, Mansilla FI, Pereyra MM, Diaz MA, Volentini SI, Poehlein A, Meinhardt F, Daniel R, Dib JR.	Microorganisms	10.3390/microorganisms10050969	2022
	Culturable Screening of Plant Growth-Promoting and Biocontrol Bacteria in the Rhizosphere and Phyllosphere of Wild Rice.	Yao Z, Chen Y, Luo S, Wang J, Zhang J, Zhang J, Tian C, Tian L.	Microorganisms	10.3390/microorganisms10071468	2022
	Isolation and Characterization of Root-Associated Bacterial Endophytes and Their Biocontrol Potential against Major Fungal Phytopathogens of Rice (Oryza sativa L.).	Khaskheli MA, Wu L, Chen G, Chen L, Hussain S, Song D, Liu S, Feng G.	Pathogens	10.3390/pathogens9030172	2020
Phylogeny	Fictibacillus iocasae sp. nov., isolated from the deep-sea sediment in Pacmanus, Manus Basin.	Wang HL, Zhang J, Sun L	Arch Microbiol	10.1007/s00203-018-1527-x	2018
Phylogeny	Fictibacillus aquaticus sp. nov., isolated from downstream river water.	Pal D, Bhardwaj A, Kaur N, Sudan SK, Bisht B, Kumari M, Vyas B, Krishnamurthi S, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002474	2017
Phylogeny	Fictibacillus halophilus sp. nov., from a microbial mat of a hot spring atop the Himalayan Range.	Sharma A, Kohli P, Singh Y, Schumann P, Lal R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001051	2016
Phylogeny	Fictibacillus phosphorivorans gen. nov., sp. nov. and proposal to reclassify Bacillus arsenicus, Bacillus barbaricus, Bacillus macauensis, Bacillus nanhaiensis, Bacillus rigui, Bacillus solisalsi and Bacillus gelatini in the genus Fictibacillus.	Glaeser SP, Dott W, Busse HJ, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.049171-0	2013
Phylogeny	Bacillus nanhaiensis sp. nov., isolated from an oyster.	Chen YG, Zhang L, Zhang YQ, He JW, Klenk HP, Tang SK, Zhang YX, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.022889-0	2010

References

#16649	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23009
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26232	IJSEM 888 2011 ( DOI 10.1099/ijs.0.022889-0 , PubMed 20495032 )
#29858	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26232
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Fictibacillus nanhaiensis (DSM 23009, KCTC 13712, JSM 082006)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042686385

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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