Name: Methanococcoides sp. AM1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130395

Type strain:

Species: Methanococcoides sp.

Strain Designation: AM1

Culture col. no.: DSM 26764

Strain history: <- A. Watkins, Cardiff Univ., School of Earth and Ocean Scs., United Kingdom; AM1 <- A. Watkins {2009}

NCBI tax ID(s): 1966350 (species)

SI-ID 396772

DSM 26764

Other strains from Methanococcoides sp.

M. sp. HCM 6, DSM 7059, OCM 152
M. sp. JCM 30226, NBRC 110458

Section

Methanococcoides sp. AM1 is an anaerobe, mesophilic archaeon that was isolated from marine sediment from gravity core.

anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanococcoides*
	Full Scientific Name (LPSN)	Methanococcoides Sowers and Ferry 1985

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21921]

Culture medium

METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c)

[Ref.: #21921]

Culture medium growth

[Ref.: #21921]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21921]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21921]			growth	25 °C

[Ref.: #21921]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21921]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21921]	Sample type/isolated from	marine sediment from gravity core
[Ref.: #21921]	Geographic location (country and/or sea, region)	Aarhus Bay
[Ref.: #21921]	Country	Denmark
[Ref.: #21921]	Country ISO 3 Code	DNK
[Ref.: #21921]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Core sample

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE862406 (>99% sequence identity) for Methanococcoides from Microbeatlas

Aquatic Samples	53
Soil Samples	2
Animal Samples
Plant Samples
Total Samples	55

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21921]	Methanococcoides sp. AM1 partial 16S rRNA gene, strain AM1	HE862406	1443	ENA	1201011 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanococcoides sp. AM1 AM1	GCA_900774055	contig	GenBank	1201011 tax ID	*
[Ref.: #66792]	Methanococcoides sp. AM1	1201011.4	wgs	PATRIC	1201011 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanococcoides sp. AM1 PATRIC: 1201011.4
[Ref.: #69480]	motile	no	91.58	no
[Ref.: #69480]	gram-positive	no	97.469	no
[Ref.: #69480]	anaerobic	yes	97.926	yes
[Ref.: #69480]	aerobic	no	92.389	yes
[Ref.: #69480]	halophile	no	81.832	no
[Ref.: #69480]	spore-forming	no	95.522	no
[Ref.: #69480]	thermophile	no	93.083	yes
[Ref.: #69480]	glucose-util	yes	71.898	no
[Ref.: #69480]	flagellated	no	96.205	no
[Ref.: #69480]	glucose-ferment	no	73.81	no

Availability in culture collections External links

[Ref.: #21921]

Culture collection no.

DSM 26764

[Ref.: #88927]

SI-ID 396772

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21921

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26764

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88927

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396772.1 )

* These data were automatically processed and therefore are not curated

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