Name: Listeria booriae DSM 28860
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130391

Type strain:

Species: Listeria booriae

Culture col. no.: DSM 28860, CIP 111022, LMG 28311, FSL A5-0281

Strain history: CIP <- 2016, DSMZ <- M. Wiedmann, Cornell Univ., Ithaca, USA: strain FSL A5-0281 <- A. Andrus

NCBI tax ID(s): 1552123 (species)

SI-ID 394241

LMG 28311, DSM 28860, CIP 111022

Special Collections

DSMZ
CIP

Section

Listeria booriae DSM 28860 is a Gram-positive, rod-shaped bacterium that was isolated from non-food-contact surface in a dairy processing plant.

Gram-positive
rod-shaped
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Listeriaceae*
	Genus	*Listeria*
	Species	**Listeria booriae**
	Full Scientific Name (LPSN)	Listeria booriae Weller et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #116839]	Gram stain	positive

[Ref.: #116839]	Cell shape	rod-shaped

[Ref.: #116839]	Motility	no

[Ref.: #21631]	Type of hemolysis	gamma
[Ref.: #21631]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41622]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #41622]

Culture medium growth

[Ref.: #41622]

Culture medium composition

expand / minimize

[Ref.: #21631]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #21631]

Culture medium growth

[Ref.: #21631]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21631]

Culture medium composition

expand / minimize

[Ref.: #21631]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #21631]

Culture medium growth

[Ref.: #21631]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21631]

Culture medium composition

expand / minimize

[Ref.: #116839]

Culture medium

CIP Medium 45

[Ref.: #116839]

Culture medium growth

[Ref.: #116839]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #21631]			growth	30 °C
[Ref.: #41622]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68376]	D-arabitol ChEBI	+	builds acid from	* from API LIST
[Ref.: #68376]	D-tagatose ChEBI	-	builds acid from	* from API LIST
[Ref.: #68376]	D-xylose ChEBI	+	builds acid from	* from API LIST
[Ref.: #68376]	esculin ChEBI	+	hydrolysis	* from API LIST
[Ref.: #68376]	glucose 1-phosphate ChEBI	-	builds acid from	* from API LIST
[Ref.: #68376]	L-rhamnose ChEBI	+	builds acid from	* from API LIST
[Ref.: #68376]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API LIST

	Enzyme	Enzyme activity	EC number
[Ref.: #68376]	beta-glucosidase	+	3.2.1.21	* from API LIST
[Ref.: #21631]	catalase	+	1.11.1.6
[Ref.: #21631]	cytochrome-c oxidase	-	1.9.3.1

API® LIST:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Differentiation L. innocura(+)/ L.monoytogenes(-)DIM	Esculin hydrolysisESC	alpha-Mannosidasealpha MAN	Acid from D-arabitolDARL	Acid from D-xyloseXYL	Acid from L-rhamnoseRHA	Acid from methyl-alpha-D-glucopyranosideMDG	Acid from D-riboseRIB	Acid from alpha-D-glucose 1-phosphateG1P	Acid from D-tagatoseTAG	beta hemolysis presentbeta HEM
[Ref.: #21631]	1100	-	+	+	+	+	+	+	-	-	-	not determinedn.d.
[Ref.: #21631]	1099	-	+	+/-	+	+	+	+	+/-	-	-	not determinedn.d.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	acetoin degradation	100	3 of 3
[Ref.: #66794]	metabolism of amino sugars and derivatives	100	5 of 5
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	degradation of sugar alcohols	81.25	13 of 16
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	purine metabolism	68.09	64 of 94
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	molybdenum cofactor biosynthesis	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	degradation of pentoses	64.29	18 of 28
[Ref.: #66794]	glutamate and glutamine metabolism	64.29	18 of 28
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	alanine metabolism	58.62	17 of 29
[Ref.: #66794]	oxidative phosphorylation	58.24	53 of 91
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	allantoin degradation	55.56	5 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	55.56	5 of 9
[Ref.: #66794]	tryptophan metabolism	55.26	21 of 38
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	flavin biosynthesis	53.33	8 of 15
[Ref.: #66794]	histidine metabolism	51.72	15 of 29
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	4-hydroxyphenylacetate degradation	50	5 of 10
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	gluconeogenesis	50	4 of 8
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	glutathione metabolism	50	7 of 14
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	lysine metabolism	42.86	18 of 42
[Ref.: #66794]	citric acid cycle	42.86	6 of 14
[Ref.: #66794]	lipid metabolism	41.94	13 of 31
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	Entner Doudoroff pathway	40	4 of 10
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	propionate fermentation	30	3 of 10
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	phenol degradation	25	5 of 20
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21631]	Sample type/isolated from	non-food-contact surface in a dairy processing plant
[Ref.: #21631]	Geographic location (country and/or sea, region)	New York State
[Ref.: #21631]	Country	USA
[Ref.: #21631]	Country ISO 3 Code	USA
[Ref.: #21631]	Continent	North America

[Ref.: #116839]	Sample type/isolated from	Non-food-contact surface in a dairy processing plant
[Ref.: #116839]	Geographic location (country and/or sea, region)	New York State, USA
[Ref.: #116839]	Country	United States of America
[Ref.: #116839]	Country ISO 3 Code	USA
[Ref.: #116839]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Dairy product
#Engineered	#Industrial	#Plant (Factory)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21631]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116839]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

[Ref.: #21631]

GC-content

45.2 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #21631]

Culture collection no.

DSM 28860, CIP 111022, LMG 28311, FSL A5-0281

[Ref.: #88923]

SI-ID 394241

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Listeria booriae sp. nov. and Listeria newyorkensis sp. nov., from food processing environments in the USA.	Weller D, Andrus A, Wiedmann M, den Bakker HC	Int J Syst Evol Microbiol	10.1099/ijs.0.070839-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21631

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28860

#41622 ; Curators of the CIP;

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68376

Automatically annotated from API LIST .

#88923

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID394241.1 )

#116839 Collection of Institut Pasteur ; Curators of the CIP; CIP 111022
* These data were automatically processed and therefore are not curated

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