Name: Murimonas intestini SRB-509-4-S-H
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130361

Type strain:

Species: Murimonas intestini

Strain Designation: SRB-509-4-S-H

Culture col. no.: DSM 27577, CCUG 64595

Strain history: <- T. Clavel, Research Center for Nutrition and Food Sci. (ZIEL), TU Munich, Germany <- K. Kläring

NCBI tax ID(s): 1337051 (species)

SI-ID 399488

DSM 27577, CCUG 64595

Other strains from Murimonas intestini

M. intestini SRB-530-5-H, DSM 26524, CCUG 63391, ... (type strain)
M. intestini SRB-524-4-S-H, DSM 27578, CCUG ...

Section

Murimonas intestini SRB-509-4-S-H is an anaerobe, mesophilic animal pathogen that was isolated from caecal content of a 17-week-old female heterozygous TNF ^DeltaARE/+ mouse that was fed a standard experimental diet supplemented with ground flaxseeds.

anaerobe
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Murimonas*
	Species	**Murimonas intestini**
	Full Scientific Name (LPSN)	Murimonas intestini Kläring et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #63142]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22148]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #22148]

Culture medium growth

[Ref.: #22148]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22148]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22148]			growth	37 °C
[Ref.: #63142]			growth	37 °C

[Ref.: #22148]	Temperature range	mesophilic
[Ref.: #63142]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22148]	Oxygen tolerance	anaerobe
[Ref.: #63142]	Oxygen tolerance	anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #22148]	12828	-	-	+	+	-	+/-	+	+	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22148]	Sample type/isolated from	caecal content of a 17-week-old female heterozygous TNF ^DeltaARE/+ mouse that was fed a standard experimental diet supplemented with ground flaxseeds
[Ref.: #22148]	Geographic location (country and/or sea, region)	Freising-Weihenstephan
[Ref.: #22148]	Country	Germany
[Ref.: #22148]	Country ISO 3 Code	DEU
[Ref.: #22148]	Continent	Europe

[Ref.: #63142]	Sample type/isolated from	Mouse intestine
[Ref.: #63142]	Sampling date	2012-08-01
[Ref.: #63142]	Geographic location (country and/or sea, region)	Weihenstephan,Freising
[Ref.: #63142]	Country	Germany
[Ref.: #63142]	Country ISO 3 Code	DEU
[Ref.: #63142]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine
#Host Body Product	#Gastrointestinal tract	#Caecal content

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF601349 (>99% sequence identity) for Murimonas intestini subclade from Microbeatlas

Aquatic Samples	74
Soil Samples	24
Animal Samples	10124
Plant Samples	24
Total Samples	10246

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22148]	Pathogenicity (animal)	yes, in single cases
[Ref.: #22148]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22148]	Murimonas intestini strain SRB-509-4-S-H 16S ribosomal RNA gene, partial sequence	KF601349	1357	ENA	1337051 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Murimonas intestini DSM 27577	GCA_024622165	contig	GenBank	1337051 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Murimonas intestini DSM 27577 NCBI: GCA_024622165.1
[Ref.: #69480]	flagellated	no	91.389	no
[Ref.: #69480]	gram-positive	yes	90.542	no
[Ref.: #69480]	anaerobic	yes	98.433	yes
[Ref.: #69480]	aerobic	no	98.185	yes
[Ref.: #69480]	halophile	no	80.46	no
[Ref.: #69480]	spore-forming	yes	78.963	no
[Ref.: #69480]	motile	no	79.429	no
[Ref.: #69480]	glucose-ferment	yes	70.551	no
[Ref.: #69480]	thermophile	no	99.253	no
[Ref.: #69480]	glucose-util	yes	91.556	no

Availability in culture collections External links

[Ref.: #22148]

Culture collection no.

DSM 27577, CCUG 64595

[Ref.: #88893]

SI-ID 399488

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Murimonas intestini gen. nov., sp. nov., an acetate-producing bacterium of the family Lachnospiraceae isolated from the mouse gut.	Klaring K, Just S, Lagkouvardos I, Hanske L, Haller D, Blaut M, Wenning M, Clavel T	Int J Syst Evol Microbiol	10.1099/ijs.0.000030	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22148

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27577

#63142 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 64595

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88893

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399488.1 )

* These data were automatically processed and therefore are not curated

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Murimonas intestini DSM 27577

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