Murimonas intestini SRB-530-5-H is an anaerobe bacterium that was isolated from caecal content of a 17-week-old female heterozygous TNF deltaARE/+ mouse suffering from ileitis.
anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Bacillota |
| Class Clostridia |
| Order Eubacteriales |
| Family Lachnospiraceae |
| Genus Murimonas |
| Species Murimonas intestini |
| Full scientific name Murimonas intestini Kläring et al. 2015 |
| BacDive ID | Other strains from Murimonas intestini (2) | Type strain |
|---|---|---|
| 130361 | M. intestini SRB-509-4-S-H, DSM 27577, CCUG 64595 | |
| 130362 | M. intestini SRB-524-4-S-H, DSM 27578, CCUG 64594 |
| 62976 | Incubation period2 days |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 22147 | CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) | Medium recipe at MediaDive | Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) | |
| #Host Body-Site | #Gastrointestinal tract | #Large intestine | |
| #Host Body Product | #Gastrointestinal tract | #Caecal content |
Global distribution of 16S sequence KC311366 (>99% sequence identity) for Murimonas intestini subclade from Microbeatlas ![]()
| @ref | Pathogenicity animal | Biosafety level | Biosafety level comment | |
|---|---|---|---|---|
| 22147 | yes, in single cases | 1 | Risk group (German classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM2462219v1 assembly for Murimonas intestini DSM 26524 | contig | 1337051 | 70.76 | ||||
| 124043 | ASM314894v1 assembly for Murimonas intestini DSM 26524 | scaffold | 1337051 | 68.7 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 22147 | Murimonas intestini strain SRB-530-5-H 16S ribosomal RNA gene, partial sequence | KC311366 | 1433 | 1337051 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 22147 | 44 | high performance liquid chromatography (HPLC) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate anaerobe | 99.56 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 75.68 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 48.94 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 68.54 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 81.01 | no |
| 125438 | anaerobic | anaerobicⓘ | yes | 85.77 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 60.53 | no |
| 125438 | aerobic | aerobicⓘ | no | 87.70 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 95.40 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 61.05 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Comparison of metagenomic analysis of fecal and gastrointestinal tract samples for identifying beneficial gut microorganisms. | Ahn JS, Han EJ, Chung HJ. | Front Microbiol | 10.3389/fmicb.2025.1533580 | 2025 | ||
| A comparative pharmacological study of three Chinese traditional medicines found Blautia to be the key functional bacterium of Coptis chinensis Franch. and Phellodendri chinensis Cortex against colitis. | Zhan J, Cheng J, Yang Y, Xu X, Lu Z, Li L, Li H, Yang Q, Hu Y, Song Y, Fan Q, Yang E, Liang Q, Sun S, Qiu F, Cao Y, Wu C. | Front Pharmacol | 10.3389/fphar.2025.1587119 | 2025 | ||
| Genetics | Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables. | Yap M, O'Sullivan O, O'Toole PW, Sheehan JJ, Fenelon MA, Cotter PD. | mSystems | 10.1128/msystems.01290-23 | 2024 | |
| Chinese Sausage Simulates High Calorie-Induced Obesity In Vivo, Identifying the Potential Benefits of Weight Loss and Metabolic Syndrome of Resveratrol Butyrate Monomer Derivatives. | Huang PH, Chen YW, Shie CK, Chen SY, Lee BH, Yin LJ, Hou CY, Shih MK. | J Nutr Metab | 10.1155/jnme/8414627 | 2025 | ||
| Berberine-microbiota interplay: orchestrating gut health through modulation of the gut microbiota and metabolic transformation into bioactive metabolites. | Dehau T, Cherlet M, Croubels S, Van De Vliet M, Goossens E, Van Immerseel F. | Front Pharmacol | 10.3389/fphar.2023.1281090 | 2023 | ||
| Effects of Monascus pilosus SWM 008-Fermented Red Mold Rice and Its Functional Components on Gut Microbiota and Metabolic Health in Rats. | Yang PX, You CR, Lin YH, Wang CS, Hsu YW, Pan TM, Lee CL. | Foods | 10.3390/foods14040651 | 2025 | ||
| Genetics | Seasonality and Geography Have a Greater Influence than the Use of Chlorine-Based Cleaning Agents on the Microbiota of Bulk Tank Raw Milk. | Yap M, Gleeson D, O'Toole PW, O'Sullivan O, Cotter PD. | Appl Environ Microbiol | 10.1128/aem.01081-21 | 2021 | |
| Longitudinal exposure to antiseizure medications shape gut-derived microbiome, resistome, and metabolome landscape. | Dop C, Auvin S, Mondot S, Lepage P, Ilhan ZE. | ISME Commun | 10.1093/ismeco/ycae123 | 2024 | ||
| Lubiprostone in chronic kidney disease: Insights into mitochondrial function and polyamines from a randomized phase 2 clinical trial | Watanabe S, Nakayama M, Yokoo T, Sanada S, Ubara Y, Komatsuda A, Asanuma K, Suzuki Y, Konta T, Kazama J, Suzuki T, Fukuda S, Soga T, Yamada T, Mizutani S, Matsumoto M, Naito Y, Taguchi K, Fukami K, Kashiwagi H, Kikuchi K, Suzuki C, Tokuno H, Urasato M, Kujirai R, Matsumoto Y, Akiyama Y, Tomioka Y, Itai S, Tongu Y, Mishima E, Kawabe C, Kasahara T, Ogata Y, Toyohara T, Sato T, Tanaka T, Abe T. | Sci Adv | 2025 | |||
| A brief period of sleep deprivation leads to subtle changes in mouse gut microbiota. | El Aidy S, Bolsius YG, Raven F, Havekes R. | J Sleep Res | 10.1111/jsr.12920 | 2020 | ||
| Pathogenicity | The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut. | Wong EO, Brownlie EJE, Ng KM, Kathirgamanathan S, Yu FB, Merrill BD, Huang KC, Martin A, Tropini C, Navarre WW. | mBio | 10.1128/mbio.02949-21 | 2022 | |
| Fermented Maillard Reaction Products by Lactobacillus gasseri 4M13 Alters the Intestinal Microbiota and Improves Dysfunction in Type 2 Diabetic Mice with Colitis. | Jeong YJ, Park HY, Nam HK, Lee KW. | Pharmaceuticals (Basel) | 10.3390/ph14040299 | 2021 | ||
| Pilot Clinical Trial of Perioperative Durvalumab and Tremelimumab in the Treatment of Resectable Colorectal Cancer Liver Metastases. | Kanikarla Marie P, Haymaker C, Parra ER, Kim YU, Lazcano R, Gite S, Lorenzini D, Wistuba II, Tidwell RSS, Song X, Foo WC, Maru DM, Chun YS, Futreal A, Kee B, Menter D, Solis L, Tzeng CW, Parseghian C, Raghav K, Morris V, Chang CC, Jenq R, Tam A, Bernatchez C, Kopetz S, Vauthey JN, Overman MJ. | Clin Cancer Res | 10.1158/1078-0432.ccr-21-0163 | 2021 | ||
| Exploring the Role of Gut Microbiota in Major Depressive Disorder and in Treatment Resistance to Antidepressants. | Fontana A, Manchia M, Panebianco C, Paribello P, Arzedi C, Cossu E, Garzilli M, Montis MA, Mura A, Pisanu C, Congiu D, Copetti M, Pinna F, Carpiniello B, Squassina A, Pazienza V. | Biomedicines | 10.3390/biomedicines8090311 | 2020 | ||
| Fusimonas intestini gen. nov., sp. nov., a novel intestinal bacterium of the family Lachnospiraceae associated with diabetes in mice. | Kusada H, Kameyama K, Meng XY, Kamagata Y, Tamaki H. | Sci Rep | 10.1038/s41598-017-18122-2 | 2017 | ||
| Phylogeny | Murimonas intestini gen. nov., sp. nov., an acetate-producing bacterium of the family Lachnospiraceae isolated from the mouse gut. | Klaring K, Just S, Lagkouvardos I, Hanske L, Haller D, Blaut M, Wenning M, Clavel T | Int J Syst Evol Microbiol | 10.1099/ijs.0.000030 | 2014 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #22147 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26524 |
| #62976 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63391 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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