Aquimarina pacifica (DSM 25593, CGMCC 1.12180, JCM 18214)

Name: Aquimarina pacifica (DSM 25593, CGMCC 1.12180, JCM 18214)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130326

Type strain

Strain Designation SW150

Culture col. no. DSM 25593 CGMCC 1.12180 JCM 18214 SW150

NCBI tax ID(s) 1296415

Special Collections DSMZ JCM

Links

Aquimarina pacifica SW150 is a mesophilic prokaryote that was isolated from surface seawater.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402535

LMG 26872,JCM 18214,DSM 25593

@ref 20215

Last LPSN update 2025-12-16 10:00:58

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Aquimarina

Species Aquimarina pacifica

Full scientific name Aquimarina pacifica Zhang et al. 2014

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.8

Colony morphology

21596

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21596	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21596	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.3

Observation

67770

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

Isolation

@ref	Sample type	Geographic location	Latitude	Longitude
21596	surface seawater	South Pacific Gyre at station U1369 (39° 19' S 139° 48' W)	-39.3167	-139.8 -39.3167/-139.8
67770	Surface seawater in the South Pacific Gyre (39° 19' S 139° 48' W)		-39.3167	-139.8 -39.3167/-139.8

Taxonmaps

69479

Global distribution of 16S sequence KC476291 (>99% sequence identity) for Aquimarina pacifica subclade from Microbeatlas

Aquatic Samples	58
Soil Samples	1
Animal Samples	34
Plant Samples	1
Total Samples	94

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21596	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	of Aquimarina pacifica assembly for Aquimarina pacifica SW150	contig	GCA_000520955	1296415.3	2579778789	1296415	44.52

Genome browser: GCA_000520955

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21596	Aquimarina pacifica strain SW150 16S ribosomal RNA gene, partial sequence	KC476291	1483		1296415
67770	Aquimarina sp. U1369-101122-SW150 16S ribosomal RNA gene, partial sequence	JQ082139	1428		1171528

GC content

@ref	GC-content (mol%)	Method
21596	33.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aquimarina pacifica SW150
NCBI: GCA_000520955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	no	61.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	75.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquimarina aggregata sp. nov., isolated from seawater.	Wang Y, Ming H, Guo W, Chen H, Zhou C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001209	2016
Phylogeny	Aquimarina pacifica sp. nov., isolated from seawater.	Zhang Z, Yu T, Xu T, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.062695-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21596	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25593
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aquimarina pacifica (DSM 25593, CGMCC 1.12180, JCM 18214)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000520955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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