Tatumella saanichensis (DSM 19846, CCUG 55408, NML 06-3099)

Name: Tatumella saanichensis (DSM 19846, CCUG 55408, NML 06-3099)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130314

Type strain

Culture col. no. DSM 19846 CCUG 55408 NML 06-3099

NCBI tax ID(s) 480813

Special Collections DSMZ CCUG

History <- D. M. Tracz and J. Walsh, Public Health Agency of Canada, Winnipeg, Canada <- L. Hoang, British Columbia Centre for Disease Control, Provincial Health Services Authority, Vancouver, Canada <- P. Kibsey, Victoria General Hospital, Victoria, British Columbia, Canada

Links

Tatumella saanichensis DSM 19846 is an aerobe, mesophilic prokaryote that was isolated from sputum of a cystic fibrosis patient.

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406477

DSM 19846,CCUG 55408

@ref 20215

Last LPSN update 2026-02-09 11:31:11

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Erwiniaceae

Genus Tatumella

Species Tatumella saanichensis

Full scientific name Tatumella saanichensis Tracz et al. 2015

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21830	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21830	positive	growth	28	mesophilic
60574	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

60574

Oxygen toleranceaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	#Cystic fibrosis
#Infection	#Patient	-
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
21830	sputum of a cystic fibrosis patient		British Columbia	Canada	CAN	North America
60574	Human sputum,16-yr-old man,cystic fibrosis	2006-01-01	British Columbia,Victoria Gen.Hos	Canada	CAN	North America

Taxonmaps

69479

Global distribution of 16S sequence EU215774 (>99% sequence identity) for Tatumella saanichensis from Microbeatlas

Aquatic Samples	19
Soil Samples	8
Animal Samples	185
Plant Samples	35
Total Samples	247

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
21830	yes, in single cases	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	06-3099_v1 assembly for Tatumella saanichensis NML 06-3099	contig	GCA_000439375	1344012.3	2791354942	480813	67.42

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21830	Tatumella saanichensis strain NML 06-3099 16S ribosomal RNA gene, partial sequence	EU215774	1347		480813

GC content

@ref	GC-content (mol%)	Method
21830	51.27	sequence analysis

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Hanseniaspora opuntiae, Saccharomyces cerevisiae, Lactobacillus fermentum, and Acetobacter pasteurianus predominate during well-performed Malaysian cocoa bean box fermentations, underlining the importance of these microbial species for a successful cocoa bean fermentation process.	Papalexandratou Z, Lefeber T, Bahrim B, Lee OS, Daniel HM, De Vuyst L.	Food Microbiol	10.1016/j.fm.2013.02.015	2013
	Microbial composition and metabolic profiles during machine-controlled intra-factory fermentation of cocoa beans harvested in semitropical area of Japan.	Nishimura H, Shiwa Y, Tomita S, Endo A.	Biosci Microbiota Food Health	10.12938/bmfh.2023-036	2024
Phylogeny	Molecular validation of clinical Pantoea isolates identified by MALDI-TOF.	Soutar CD, Stavrinides J.	PLoS One	10.1371/journal.pone.0224731	2019
Metabolism	The 5-Ketofructose Reductase of Gluconobacter sp. Strain CHM43 Is a Novel Class in the Shikimate Dehydrogenase Family.	Nguyen TM, Goto M, Noda S, Matsutani M, Hodoya Y, Kataoka N, Adachi O, Matsushita K, Yakushi T.	J Bacteriol	10.1128/jb.00558-20	2021
Pathogenicity	Effect of sulfite addition and pied de cuve inoculation on the microbial communities and sensory profiles of Chardonnay wines: dominance of indigenous Saccharomyces uvarum at a commercial winery.	Morgan SC, McCarthy GC, Watters BS, Tantikachornkiat M, Zigg I, Cliff MA, Durall DM.	FEMS Yeast Res	10.1093/femsyr/foz049	2019
Phylogeny	Species diversity, community dynamics, and metabolite kinetics of the microbiota associated with traditional ecuadorian spontaneous cocoa bean fermentations.	Papalexandratou Z, Falony G, Romanens E, Jimenez JC, Amores F, Daniel HM, De Vuyst L.	Appl Environ Microbiol	10.1128/aem.05523-11	2011
Metabolism	Microbiological and physicochemical characterization of small-scale cocoa fermentations and screening of yeast and bacterial strains to develop a defined starter culture.	Pereira GV, Miguel MG, Ramos CL, Schwan RF.	Appl Environ Microbiol	10.1128/aem.01144-12	2012
Phylogeny	Tatumella saanichensis sp. nov., isolated from a cystic fibrosis patient.	Tracz DM, Gilmour MW, Mabon P, Beniac DR, Hoang L, Kibsey P, Van Domselaar G, Tabor H, Westmacott GR, Corbett CR, Bernard KA	Int J Syst Evol Microbiol	10.1099/ijs.0.000207	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21830	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19846
#60574	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55408
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tatumella saanichensis (DSM 19846, CCUG 55408, NML 06-3099)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000439375

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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