Collinsella massiliensis GD3 is an anaerobe, mesophilic prokaryote that was isolated from human feces, French Caucasoid woman with Guillain-Barre syndrome.
anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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Last LPSN update
2025-12-16 10:00:57 |
| Domain Bacillati |
| Phylum Actinomycetota |
| Class Coriobacteriia |
| Order Coriobacteriales |
| Family Coriobacteriaceae |
| Genus Collinsella |
| Species Collinsella massiliensis |
| Full scientific name Collinsella massiliensis Padmanabhan et al. 2016 |
| BacDive ID | Other strains from Collinsella massiliensis (1) | Type strain |
|---|---|---|
| 160714 | C. massiliensis Cla-CZ-158, DSM 108992 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 21552 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive  | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 21552 | FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) | Medium recipe at MediaDive | Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Deionized water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 21552 | positive | growth | 37 | mesophilic |
| 21552 | Oxygen toleranceanaerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68380 | 29016 ChEBI | arginine | + | hydrolysis | from API rID32A |
| 68380 | 16024 ChEBI | D-mannose | - | fermentation | from API rID32A |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 68380 | 17632 ChEBI | nitrate | - | reduction | from API rID32A |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | from API rID32A |
| @ref | Chebi-ID | Metabolite | Indole test | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | - | from API rID32A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68380 | alkaline phosphatase | + | 3.1.3.1 | from API rID32A |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68380 | alpha-fucosidase | + | 3.2.1.51 | from API rID32A |
| 68380 | alpha-galactosidase | + | 3.2.1.22 | from API rID32A |
| 68380 | alpha-glucosidase | + | 3.2.1.20 | from API rID32A |
| 68380 | arginine dihydrolase | + | 3.5.3.6 | from API rID32A |
| 68380 | beta-galactosidase | - | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68380 | beta-glucosidase | - | 3.2.1.21 | from API rID32A |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | leucyl glycin arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68380 | proline-arylamidase | + | 3.4.11.5 | from API rID32A |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| @ref | URE | ADH (Arg) | alpha GAL | beta GAL | beta-Galactosidase 6-phosphatebeta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta-N-Acetyl-beta-glucosaminidasebeta NAG | MNE | RAF | GDC | alpha FUC | Reduction of nitrateNIT | IND | PAL | L-arginine arylamidaseArgA | ProA | LGA | Phenylalanine arylamidasePheA | Leucine arylamidaseLeuA | PyrA | Tyrosine arylamidaseTyrA | Alanine arylamidaseAlaA | Glycin arylamidaseGlyA | Histidine arylamidaseHisA | Glutamyl-glutamate arylamidaseGGA | Serine arylamidaseSerA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21552 | - | + | + | - | - | + | - | - | - | - | - | - | - | + | - | - | + | +/- | + | - | +/- | +/- | - | +/- | +/- | +/- | +/- | - | +/- | |
| 21552 | - | + | + | - | - | + | - | - | - | - | - | - | - | + | - | - | + | + | + | - | +/- | + | - | + | +/- | + | + | - | +/- |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM33381v1 assembly for [Collinsella] massiliensis GD3 | contig | GCA_000333815   | 1232426.4  | 2551306475  | 1232426 | 27.19 | |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 21552 | [Collinsella] massiliensis strain GD3 16S ribosomal RNA gene, partial sequence | JX424766 | 1279 |  | 1232426 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 21552 | 65.8 | sequence analysis |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Multi-omics study unravels gut microbiota and metabolites alteration in patients with Wilson's disease. | Cai X, Dai J, Xie Y, Xu S, Liu M. | Sci Rep | 10.1038/s41598-024-71740-5 | 2024 | |
| Olsenella scatoligenes-derived skatole promotes smooth muscle cell proliferation and migration to aggravate atherosclerosis. | Zhao Y, Chen J, Zhu S, Xu Y, Zhu J, Yang J, Zhou W, Yang Y, Lin M, Chen Q, Xia M, Chen Y, Liu Y. | ISME J | 10.1093/ismejo/wraf238 | 2025 | | |
| Investigating the cecal microbiota of broilers raised in extensive and intensive production systems. | Marcolla CS, Ju T, Lantz HL, Willing BP. | Microbiol Spectr | 10.1128/spectrum.02352-23 | 2023 | | |
| Cecal Microbiota Development and Physiological Responses of Broilers Following Early Life Microbial Inoculation Using Different Delivery Methods and Microbial Sources. | Marcolla CS, Ju T, Willing BP. | Appl Environ Microbiol | 10.1128/aem.00271-23 | 2023 | | |
| Genetics | Non-contiguous finished genome sequence and description of Collinsella massiliensis sp. nov. | Padmanabhan R, Dubourg G, Jean-Christophe lagier, Nguyen TT, Couderc C, Rossi-Tamisier M, Caputo A, Raoult D, Fournier PE. | Stand Genomic Sci | 10.4056/sigs.5399696 | 2014 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive130264.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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