Name: Ottowia beijingensis GCS-AN-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130261

Type strain:

Species: Ottowia beijingensis

Strain Designation: GCS-AN-3

Culture col. no.: DSM 100246, CGMCC 1.12324, LMG 27179, MCCC 1A01410

Strain history: <- LMG <- Q. Lai, Key Lab. Marine Biogenetic Resources, Third Institute of Oceanography, Xiamen, China

NCBI tax ID(s): 1207057 (species)

SI-ID 381214

LMG 27179, CGMCC 1.12324

Section

Ottowia beijingensis GCS-AN-3 is a mesophilic, Gram-negative bacterium that was isolated from coking wastewater activated sludge.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Ottowia*
	Species	**Ottowia beijingensis**
	Full Scientific Name (LPSN)	Ottowia beijingensis Cao et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21712]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #21712]

Culture medium growth

[Ref.: #21712]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21712]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21712]			growth	28 °C

[Ref.: #21712]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.965

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21712]	23301	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21712]	Sample type/isolated from	coking wastewater activated sludge
[Ref.: #21712]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #21712]	Country	China
[Ref.: #21712]	Country ISO 3 Code	CHN
[Ref.: #21712]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC755038 (>99% sequence identity) for Ottowia from Microbeatlas

Aquatic Samples	210
Soil Samples	48
Animal Samples	120
Plant Samples	8
Total Samples	386

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21712]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21712]	Ottowia beijingensis strain GCS-AN-3 16S ribosomal RNA gene, partial sequence	KC755038	1492	ENA	1207057 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ottowia beijingensis GCS-AN-3	GCA_013423955	contig	GenBank	1207057 tax ID	*
[Ref.: #66792]	Ottowia beijingensis strain GCS-AN-3	1207057.3	wgs	PATRIC	1207057 tax ID	*

[Ref.: #21712]

GC-content

67.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ottowia beijingensis strain GCS-AN-3 PATRIC: 1207057.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ottowia beijingensis strain GCS-AN-3 PATRIC: 1207057.3
[Ref.: #69480]	motile	no	79.732	no
[Ref.: #69480]	gram-positive	no	98.68	no
[Ref.: #69480]	anaerobic	no	97.26	no
[Ref.: #69480]	aerobic	yes	87.295	no
[Ref.: #69480]	halophile	no	93.675	no
[Ref.: #69480]	spore-forming	no	95.609	no
[Ref.: #69480]	thermophile	no	93.265	no
[Ref.: #69480]	glucose-util	no	88.211	yes
[Ref.: #69480]	flagellated	no	93.263	no
[Ref.: #69480]	glucose-ferment	no	91.317	yes

Availability in culture collections External links

[Ref.: #21712]

Culture collection no.

DSM 100246, CGMCC 1.12324, LMG 27179, MCCC 1A01410

[Ref.: #88800]

SI-ID 381214

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ottowia testudinis sp. nov., isolated from the cloaca of a giant Asian pond turtle (Heosemys grandis).	Busse HJ, Kampfer P, Szostak MP, Spergser J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005348	2022	*
Phylogeny	Ottowia flava sp. nov., isolated from fish intestines.	Shi SB, Li GD, Yang LF, Liu C, Jiang MG, Li QY, Wu JF, Zhang K, Jiang LQ, Shen NK, Jiang CL, Jiang Y	Antonie Van Leeuwenhoek	10.1007/s10482-019-01284-6	2019	*
Phylogeny	Ottowia konkukae sp. nov., isolated from rotten biji (tofu residue).	Yi KJ, Im WT, Kim DW, Kim SK	Int J Syst Evol Microbiol	10.1099/ijsem.0.003009	2018	*
Phylogeny	Ottowia oryzae sp. nov., isolated from Andong sikhye, a Korean traditional rice beverage.	Heo J, Cho H, Hong SB, Kim JS, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002935	2018	*
Phylogeny	Ottowia beijingensis sp. nov., isolated from coking wastewater activated sludge, and emended description of the genus Ottowia.	Cao J, Lai Q, Liu Y, Li G, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.054015-0	2013	*
Phylogeny	Ottowia massiliensis sp. nov., a new bacterium isolated from a fresh, healthy human fecal sample.	Maaloum M, Lo CI, Ndongo S, Meng MM, Saile R, Alibar S, Raoult D, Fournier PE	FEMS Microbiol Lett	10.1093/femsle/fnac086	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21712

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100246

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88800

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID381214.1 )

* These data were automatically processed and therefore are not curated

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Ottowia beijingensis strain GCS-AN-3

Ottowia beijingensis strain GCS-AN-3

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