Name: Comamonas jiangduensis YW1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130254

Type strain:

Species: Comamonas jiangduensis

Strain Designation: YW1

Culture col. no.: DSM 100319, CCTCC AB 2012033, KACC 16697

Strain history: <- KACC <- L.-N. Sun et al., Key Lab. of Microbiological Engineering of Agricultural Environment, Nanjing Agricultural University; YW1

NCBI tax ID(s): 1194168 (species)

SI-ID 398118

DSM 100319

Section

Comamonas jiangduensis YW1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil from rice field.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Comamonas*
	Species	**Comamonas jiangduensis**
	Full Scientific Name (LPSN)	Comamonas jiangduensis Sun et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30841]	Gram stain	negative

[Ref.: #30841]	Cell length	1.35 µm

[Ref.: #30841]	Cell width	0.35 µm

[Ref.: #30841]	Cell shape	rod-shaped

[Ref.: #30841]	Motility	yes

[Ref.: #30841]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21553]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #21553]

Culture medium growth

[Ref.: #21553]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21553]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21553]			growth	28 °C
[Ref.: #30841]			optimum	37 °C

[Ref.: #21553]	Temperature range	mesophilic
[Ref.: #30841]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30841]			optimum	7.25

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30841]

Oxygen tolerance

aerobe

[Ref.: #30841]

Ability of spore formation

[Ref.: #21553]

Name of produced compound

surfactant

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30841]		NaCl		optimum	1	%

[Ref.: #30841]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30841]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #30841]	acetate ChEBI	+	carbon source
[Ref.: #30841]	formate ChEBI	+	carbon source
[Ref.: #30841]	glycerol ChEBI	+	carbon source
[Ref.: #30841]	itaconate ChEBI	+	carbon source
[Ref.: #30841]	lactate ChEBI	+	carbon source
[Ref.: #30841]	leucine ChEBI	+	carbon source
[Ref.: #30841]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30841]	proline ChEBI	+	carbon source
[Ref.: #30841]	propionate ChEBI	+	carbon source
[Ref.: #30841]	succinate ChEBI	+	carbon source
[Ref.: #30841]	threonine ChEBI	+	carbon source
[Ref.: #30841]	tween 40 ChEBI	+	carbon source
[Ref.: #30841]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30841]		catalase	+	1.11.1.6
[Ref.: #30841]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21553]	Sample type/isolated from	soil from rice field
[Ref.: #21553]	Geographic location (country and/or sea, region)	Jiangsu Province, Jiangdu City
[Ref.: #21553]	Country	China
[Ref.: #21553]	Country ISO 3 Code	CHN
[Ref.: #21553]	Continent	Asia
[Ref.: #21553]	Geographic location	31.3667°/120.9330°
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21553]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21553]	Comamonas jiangduensis strain YW1 16S ribosomal RNA gene, partial sequence	JQ941713	1455	ENA	1194168 tax ID

[Ref.: #30841]	GC-content	65.3 mol%
[Ref.: #21553]	GC-content	63.3 mol%

Availability in culture collections External links

[Ref.: #21553]

Culture collection no.

DSM 100319, CCTCC AB 2012033, KACC 16697

[Ref.: #88794]

SI-ID 398118

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comamonas jiangduensis sp. nov., a biosurfactant-producing bacterium isolated from agricultural soil.	Sun LN, Zhang J, Chen Q, He J, Li QF, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.045716-0	2012	*
Genetics	Draft Genome Sequence of Comamonas jiangduensis Strain YW1(T).	Kangale LJ, Levasseur A, Raoult D, Ghigo E, Fournier PE	Microbiol Resour Announc	10.1128/MRA.00513-20	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21553

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100319

#30841

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27171 (see below)

#88794

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398118.1 )

#27171

IJSEM 2168 2013 ( DOI 10.1099/ijs.0.045716-0 , PubMed 23125317 )

* These data were automatically processed and therefore are not curated

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