Caldisalinibacter kiritimatiensis (DSM 26826, JCM 18664, L21-TYG-TH)

Name: Caldisalinibacter kiritimatiensis (DSM 26826, JCM 18664, L21-TYG-TH)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130252

Type strain

Strain Designation L21-TYG-TH, L21-TH-D2

Culture col. no. DSM 26826 JCM 18664 L21-TYG-TH L21-TH-D2

NCBI tax ID(s) 1304284

Special Collections DSMZ JCM

History <- S. Spring, Leibniz-Institut DSMZ GmbH; L21-TH-D2 <- S. Spring {2011} DSM 26826 <-- S. Spring; DSMZ, Germany; L21-TH-D2.

Links

Caldisalinibacter kiritimatiensis L21-TYG-TH is an anaerobe, thermophilic prokaryote that was isolated from anoxic zone of a hypersaline microbial mat.

anaerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 400890

JCM 18664,DSM 26826

@ref 20215

Last LPSN update 2025-12-16 10:00:57

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Tissierellales

Family Thermohalobacteraceae

Genus Caldisalinibacter

Species Caldisalinibacter kiritimatiensis

Full scientific name Caldisalinibacter kiritimatiensis Ben Hania et al. 2015

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22151	THERMOHALOBACTER MEDIUM (DSMZ Medium 1459)		Medium recipe at MediaDive	Name: THERMOHALOBACTER MEDIUM (DSMZ Medium 1459) Composition: D-Glucose 10.0 g/l KCl 4.0 g/l NaHCO3 2.5 g/l MgCl2 x 6 H2O 2.0 g/l Yeast extract 1.0 g/l Trypticase peptone 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Na-acetate 0.5 g/l Na2S x 9 H2O 0.5 g/l KH2PO4 0.3 g/l K2HPO4 0.3 g/l NH4Cl 0.1 g/l MgSO4 x 7 H2O 0.03 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.0028 g/l CoCl2 x 6 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l Sodium resazurin 0.0005 g/l AlK(SO4)2 x 12 H2O 0.00018 g/l Na2SeO4 0.0001 g/l Na2WO4 x 2 H2O 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22151	positive	growth	55	thermophilic
67770	positive	growth	55	thermophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
22151	anaerobe
125438	anaerobe	92.327

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	lactate fermentation	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	starch degradation	90	9 of 10
66794	hydrogen production	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	lipoate biosynthesis	80	4 of 5
66794	methylglyoxal degradation	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	pyrimidine metabolism	77.78	35 of 45
66794	chorismate metabolism	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	purine metabolism	75.53	71 of 94
66794	biotin biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	glycolysis	70.59	12 of 17
66794	threonine metabolism	70	7 of 10
66794	propionate fermentation	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	phenylalanine metabolism	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	acetoin degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	formaldehyde oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	non-pathway related	63.16	24 of 38
66794	gluconeogenesis	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	oxidative phosphorylation	59.34	54 of 91
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	propanol degradation	57.14	4 of 7
66794	citric acid cycle	57.14	8 of 14
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenylmercury acetate degradation	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	CMP-KDO biosynthesis	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	Entner Doudoroff pathway	50	5 of 10
66794	isoprenoid biosynthesis	50	13 of 26
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	arginine metabolism	50	12 of 24
66794	lysine metabolism	50	21 of 42
66794	ketogluconate metabolism	50	4 of 8
66794	degradation of sugar alcohols	50	8 of 16
66794	lipid metabolism	48.39	15 of 31
66794	vitamin B1 metabolism	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	histidine metabolism	44.83	13 of 29
66794	cysteine metabolism	44.44	8 of 18
66794	valine metabolism	44.44	4 of 9
66794	molybdenum cofactor biosynthesis	44.44	4 of 9
66794	vitamin B12 metabolism	44.12	15 of 34
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	tetrahydrofolate metabolism	42.86	6 of 14
66794	tryptophan metabolism	42.11	16 of 38
66794	arachidonate biosynthesis	40	2 of 5
66794	degradation of pentoses	39.29	11 of 28
66794	vitamin B6 metabolism	36.36	4 of 11
66794	pentose phosphate pathway	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	cyanate degradation	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	octane oxidation	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	pantothenate biosynthesis	33.33	2 of 6
66794	degradation of sugar acids	32	8 of 25
66794	sulfate reduction	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	tyrosine metabolism	28.57	4 of 14
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	toluene degradation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	leucine metabolism	23.08	3 of 13
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	glutathione metabolism	21.43	3 of 14
66794	heme metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Microbial community	#Microbial mat
#Condition	#Anoxic (anaerobic)	-
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22151	anoxic zone of a hypersaline microbial mat	Kiritimati, Lake 21	Kiribati	KIR	Australia and Oceania
67770	Anoxic zone of a microbial mat of the hypersaline Lake 21 on the Kiritimati Atoll		Kiribati	KIR	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence KC608867 (>99% sequence identity) for Caldisalinibacter kiritimatiensis subclade from Microbeatlas

Aquatic Samples	63
Soil Samples	12
Animal Samples	32
Plant Samples	3
Total Samples	110

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22151	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	L21-THTYG assembly for Caldisalinibacter kiritimatiensis L21-TH-D2	contig	GCA_000387765	1304284.3	2588253975	1304284	19.41

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22151	Caldisalinibacter kiritimatiensis strain L21-TH-D2 16S ribosomal RNA gene, partial sequence	KC608867	1526		1304284

GC content

@ref	GC-content (mol%)	Method
22151	30.7	sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Caldisalinibacter kiritimatiensis L21-TH-D2
NCBI: GCA_000387765.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	58.32	no
125438	anaerobic	anaerobicⓘ	yes	92.33	yes
125438	aerobic	aerobicⓘ	no	96.13	yes
125438	spore-forming	spore-formingⓘ	yes	65.22	no
125438	thermophilic	thermophileⓘ	yes	55.74	yes
125438	flagellated	motile2+ⓘ	yes	76.43	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22151	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26826
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us