Name: Paraburkholderia dilworthii DSM 29788
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130229

Type strain:

Species: Paraburkholderia dilworthii

Culture col. no.: DSM 29788, HAMBI 3353, LMG 27173, WSM 3556

Strain history: <- LMG <- P. Vandamme, Univ. Ghent, Belgium <- S. De Meyer, Murdoch University, Australia; WSM3556 <- R. Carr, Murdoch University

NCBI tax ID(s): 948106 (species)

SI-ID 381296

LMG 27173, HAMBI 3353, DSM 29788

Section

Paraburkholderia dilworthii DSM 29788 is a mesophilic bacterium that was isolated from Lebeckia ambigua, root nodules.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia dilworthii**
	Full Scientific Name (LPSN)	Paraburkholderia dilworthii (De Meyer et al. 2014) Sawana et al. 2015

Synonym

Burkholderia dilworthii

Information on morphological and physiological properties Morphology

[Ref.: #21540]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21540]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #21540]

Culture medium growth

[Ref.: #21540]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21540]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21540]			growth	30 °C

[Ref.: #21540]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #21540]	catalase	+	1.11.1.6
[Ref.: #21540]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21540]	24074	+	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	+/-	+	+	+	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21540]	Sample type/isolated from	Lebeckia ambigua, root nodules
[Ref.: #21540]	Host species	Lebeckia ambigua
[Ref.: #21540]	Geographic location (country and/or sea, region)	Cape floristic region
[Ref.: #21540]	Country	South Africa
[Ref.: #21540]	Country ISO 3 Code	ZAF
[Ref.: #21540]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ698908 (>99% sequence identity) for Paraburkholderia dilworthii from Microbeatlas

Aquatic Samples	64
Soil Samples	312
Animal Samples	13
Plant Samples	44
Total Samples	433

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21540]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21540]	Burkholderia dilworthii strain WSM3556 16S ribosomal RNA gene, partial sequence	HQ698908	1507	ENA	948106 tax ID

Availability in culture collections External links

[Ref.: #21540]

Culture collection no.

DSM 29788, HAMBI 3353, LMG 27173, WSM 3556

[Ref.: #88771]

SI-ID 381296

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia dilworthii sp. nov., isolated from Lebeckia ambigua root nodules.	De Meyer SE, Cnockaert M, Ardley JK, Van Wyk BE, Vandamme PA, Howieson JG	Int J Syst Evol Microbiol	10.1099/ijs.0.058602-0	2013	*
Genetics	High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T).	De Meyer SE, Tian R, Seshadri R, Ivanova N, Pati A, Markowitz V, Woyke T, Yates R, Howieson J, Kyrpides N, Reeve W	Stand Genomic Sci	10.1186/s40793-015-0048-3	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21540

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29788

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88771

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID381296.1 )

* These data were automatically processed and therefore are not curated

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