Name: Lysinibacillus sphaericus K3514
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130208

Type strain:

Species: Lysinibacillus sphaericus

Strain Designation: K3514, K3514T

Culture col. no.: DSM 25877, CCTCC AB 2012050, KCTC 33042

Strain history: <- Shu-kun Tang

NCBI tax ID(s): 1173107 (species)

SI-ID 406011

DSM 25877

Other strains from Lysinibacillus sphaericus

L. sphaericus Gibson 1013, 1013, DSM 28, ATCC ... (type strain)
L. sphaericus S60-67, DSM 461
L. sphaericus S64-67, DSM 462
L. sphaericus E 1-65, DSM 463
L. sphaericus 9602, DSM 396, NCTC 9602, CRBIP3.5052
L. sphaericus Gibson 97, DSM 488, ATCC 19394, ...
L. sphaericus SSII-1, DSM 1866
L. sphaericus 1593, DSM 1867
L. sphaericus NRS-732, DSM 2899, ATCC 245, CRBIP3.2498, ...
L. sphaericus Claussen, 1911, N.R. Smith, 966, ...
L. sphaericus DSM 7258, NRRL NRS-1198
L. sphaericus DSM 7260, NRRL NRS-1691
L. sphaericus DSM 7261, NRRL NRS-1692
L. sphaericus DSM 8444, NRS 717, CRBIP3.5176
L. sphaericus M-GX18, DSM 24076, CCTCC AB 2010389
L. sphaericus Army 87, CIP 106829, NRRL NRS-1186
L. sphaericus CIP 103521, ATCC 17932
L. sphaericus A20, CIP 106828, NRRL NRS-800
L. sphaericus 25, CIP 104788, ATCC 4525, CCM ...
L. sphaericus 209.87, CIP 102939
L. sphaericus 14, CIP 106826, NRRL NRS-1695
L. sphaericus CIP 103415
L. sphaericus CIP 102465
L. sphaericus CIP 106825, NRRL BD-99
L. sphaericus 2518, CIP 51.25, CRBIP3.2497
L. sphaericus CIP 51.16, CRBIP3.2496
L. sphaericus 471, NRS-344, CIP 52.89, IAM 1286, ...
L. sphaericus CCUG 453 E
L. sphaericus CCUG 29464, NRRL NRS-1756
L. sphaericus CCUG 32090
L. sphaericus CCUG 32712
L. sphaericus CCUG 33213
L. sphaericus CCUG 39777
L. sphaericus CCUG 44478 B
L. sphaericus CCUG 46460
L. sphaericus CCUG 47570
L. sphaericus CCUG 49579
L. sphaericus CCUG 63782
L. sphaericus JCM 20116, IAM 1228

Section

Lysinibacillus sphaericus K3514 is an aerobe, spore-forming, mesophilic bacterium that was isolated from surface-sterilized tobacco leaf.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Lysinibacillus*
	Species	**Lysinibacillus sphaericus**
	Full Scientific Name (LPSN)	Lysinibacillus sphaericus (Meyer and Neide 1904) Ahmed et al. 2007

	Synonym	Lysinibacillus varians
	Synonym	Bacillus sphaericus
	Synonym	Lysinibacillus mangiferahumi
	Synonym	Lysinibacillus mangiferihumi
	Synonym	Lysinibacillus tabacifolii

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %96.928

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22048]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #22048]

Culture medium growth

[Ref.: #22048]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22048]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22048]			growth	28 °C
[Ref.: #67771]			growth	32 °C

[Ref.: #22048]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %94
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22048]	Sample type/isolated from	surface-sterilized tobacco leaf
[Ref.: #22048]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #22048]	Country	China
[Ref.: #22048]	Country ISO 3 Code	CHN
[Ref.: #22048]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	tobacco leaf
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ754706 (>99% sequence identity) for Lysinibacillus from Microbeatlas

Aquatic Samples	49
Soil Samples	72
Animal Samples	210
Plant Samples	6
Total Samples	337

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22048]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22048]	Lysinibacillus tabacifolii strain K3514 16S ribosomal RNA gene, partial sequence	JQ754706	1454	ENA	1173107 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lysinibacillus tabacifolii KCTC 33042	GCA_005217585	contig	GenBank	1173107 tax ID	*
[Ref.: #66792]	Lysinibacillus tabacifolii strain KCTC 33042	1173107.5	wgs	PATRIC	1173107 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lysinibacillus tabacifolii strain KCTC 33042 PATRIC: 1173107.5
[Ref.: #69481]	spore-forming	yes	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lysinibacillus tabacifolii strain KCTC 33042 PATRIC: 1173107.5
[Ref.: #69480]	motile	yes	84.627	no
[Ref.: #69480]	gram-positive	yes	91.297	yes
[Ref.: #69480]	anaerobic	no	96.339	no
[Ref.: #69480]	halophile	no	91.804	no
[Ref.: #69480]	spore-forming	yes	96.708	no
[Ref.: #69480]	flagellated	yes	79.807	no
[Ref.: #69480]	thermophile	no	99.896	yes
[Ref.: #69480]	glucose-util	yes	82.986	no
[Ref.: #69480]	aerobic	yes	88.303	yes
[Ref.: #69480]	glucose-ferment	no	90.09	no

Availability in culture collections External links

[Ref.: #22048]

Culture collection no.

DSM 25877, CCTCC AB 2012050, KCTC 33042

[Ref.: #88753]

SI-ID 406011

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysinibacillus tabacifolii sp. nov., a novel endophytic bacterium isolated from Nicotiana tabacum leaves.	Duan YQ, He ST, Li QQ, Wang MF, Wang WY, Zhe W, Cao YH, Mo MH, Zhai YL, Li WJ	J Microbiol	10.1007/s12275-013-2338-z	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22048

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25877

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88753

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406011.1 )

* These data were automatically processed and therefore are not curated

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Lysinibacillus tabacifolii strain KCTC 33042

Lysinibacillus tabacifolii strain KCTC 33042

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