Name: Virgibacillus natechei FarD
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130205

Type strain:

Species: Virgibacillus natechei

Strain Designation: FarD

Culture col. no.: DSM 25609, CCUG 62224

Strain history: <- M. L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; FarD <- F. Nateche-Metiaz

NCBI tax ID(s): 1216297 (species)

SI-ID 404528

DSM 25609, CCUG 62224

Section

Virgibacillus natechei FarD is an aerobe, spore-forming, mesophilic bacterium that was isolated from saline lake.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Virgibacillus*
	Species	**Virgibacillus natechei**
	Full Scientific Name (LPSN)	Virgibacillus natechei Amziane et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %96.35

[Ref.: #62806]

Incubation period

3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21985]

Culture medium

FARD MEDIUM (DSMZ Medium 1730)

[Ref.: #21985]

Culture medium growth

[Ref.: #21985]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21985]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21985]			growth	30 °C
[Ref.: #62806]			growth	30 °C

[Ref.: #21985]	Temperature range	mesophilic
[Ref.: #62806]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62806]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21985]	Sample type/isolated from	saline lake
[Ref.: #21985]	Geographic location (country and/or sea, region)	Bechar, Thaghit department (30° 51' 37'' N, 2° 00' 20'' W)
[Ref.: #21985]	Country	Algeria
[Ref.: #21985]	Country ISO 3 Code	DZA
[Ref.: #21985]	Continent	Africa
[Ref.: #21985]	Geographic location	30.8603°/-2.0056°

[Ref.: #62806]	Sample type/isolated from	Salt lake
[Ref.: #62806]	Sampling date	2011-05-01
[Ref.: #62806]	Geographic location (country and/or sea, region)	Taghit
[Ref.: #62806]	Country	Algeria
[Ref.: #62806]	Country ISO 3 Code	DZA
[Ref.: #62806]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX435821 (>99% sequence identity) for Virgibacillus natechei subclade from Microbeatlas

Aquatic Samples	1
Soil Samples	2
Animal Samples	16
Plant Samples	1
Total Samples	20

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21985]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21985]	Virgibacillus natechei strain FarD 16S ribosomal RNA gene, partial sequence	JX435821	1560	ENA	1216297 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Virgibacillus natechei DSM 25609	GCA_017874115	contig	GenBank	1216297 tax ID	*
[Ref.: #66792]	Virgibacillus natechei strain DSM 25609	1216297.3	wgs	PATRIC	1216297 tax ID	*
[Ref.: #66792]	Virgibacillus natechei DSM 25609	2913446363	draft	JGI IMG/M	1216297 tax ID	*
[Ref.: #66792]	Virgibacillus natechei DSM 25609	GCA_026013645	complete	GenBank	1216297 tax ID	*

[Ref.: #21985]

GC-content

42.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Virgibacillus natechei strain DSM 25609 PATRIC: 1216297.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Virgibacillus natechei DSM 25609 NCBI: GCA_026013645.1
[Ref.: #69480]	motile	yes	85.977	no
[Ref.: #69480]	flagellated	yes	72.428	no
[Ref.: #69480]	gram-positive	yes	89.895	no
[Ref.: #69480]	anaerobic	no	99.319	yes
[Ref.: #69480]	aerobic	yes	91.438	yes
[Ref.: #69480]	halophile	yes	95.221	no
[Ref.: #69480]	spore-forming	yes	94.571	no
[Ref.: #69480]	glucose-ferment	no	86.867	no
[Ref.: #69480]	thermophile	no	94.005	yes
[Ref.: #69480]	glucose-util	yes	88.163	no

Availability in culture collections External links

[Ref.: #21985]

Culture collection no.

DSM 25609, CCUG 62224

[Ref.: #88751]

SI-ID 404528

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Virgibacillus natechei sp. nov., a moderately halophilic bacterium isolated from sediment of a saline lake in southwest of Algeria.	Amziane M, Metiaz F, Darenfed-Bouanane A, Djenane Z, Selama O, Abderrahmani A, Cayol JL, Fardeau ML	Curr Microbiol	10.1007/s00284-012-0300-7	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21985

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25609

#62806 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62224

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88751

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404528.1 )

* These data were automatically processed and therefore are not curated

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Virgibacillus natechei strain DSM 25609

Virgibacillus natechei DSM 25609

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