Name: Metabacillus crassostreae DSM 24486
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130198

Type strain:

Species: Metabacillus crassostreae

Culture col. no.: DSM 24486, CCTCC AB 2010452, CIP 110943, JCM 17523, JSM 100118

Strain history: CIP <- 2015, DSMZ <- S.-K Tang and Y.-G. Chen, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China: strain JSM 100118 <- Y.-G. Chen and Q.-H. Chen

NCBI tax ID(s): 929098 (species)

SI-ID 397676

DSM 24486, CIP 110943

Section

Metabacillus crassostreae DSM 24486 is a spore-forming, mesophilic, motile bacterium that was isolated from invertebrate, oyster .

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Metabacillus*
	Species	**Metabacillus crassostreae**
	Full Scientific Name (LPSN)	Metabacillus crassostreae (Chen et al. 2015) Patel and Gupta 2020

Synonym

Bacillus crassostreae

Information on morphological and physiological properties Morphology

[Ref.: #118777]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #118777]	Cell shape	rod-shaped

[Ref.: #118777]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.297

Information on culture and growth conditions Culture and growth conditions

[Ref.: #35296]

Culture medium

Marine agar (MA)

[Ref.: #35296]

Culture medium growth

[Ref.: #35296]

Culture medium composition

expand / minimize

[Ref.: #21529]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21529]

Culture medium growth

[Ref.: #21529]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21529]

Culture medium composition

expand / minimize

[Ref.: #118777]

Culture medium

CIP Medium 13

[Ref.: #118777]

Culture medium growth

[Ref.: #118777]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #21529]	growth	30 °C
[Ref.: #35296]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #21529]	Temperature range	mesophilic
[Ref.: #35296]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21529]	Sample type/isolated from	invertebrate, oyster (Crassostrea hongkongensis)
[Ref.: #21529]	Host species	Crassostrea hongkongensis
[Ref.: #21529]	Geographic location (country and/or sea, region)	South China Sea, Naozhou Island
[Ref.: #21529]	Country	China
[Ref.: #21529]	Country ISO 3 Code	CHN
[Ref.: #21529]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Homogenate of an oyster (Crassostrea hongkongensis) from Naozhou Island in the South China Sea
[Ref.: #67770]	Host species	Crassostrea hongkongensis

[Ref.: #118777]	Sample type/isolated from	Invertebrate, oyster, Crassostrea hongkongensis
[Ref.: #118777]	Geographic location (country and/or sea, region)	Naozhou island, South China Sea
[Ref.: #118777]	Country	China
[Ref.: #118777]	Country ISO 3 Code	CHN
[Ref.: #118777]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ419276 (>99% sequence identity) for Bacillus weihaiensis from Microbeatlas

Aquatic Samples	52
Soil Samples	134
Animal Samples	81
Plant Samples	30
Total Samples	297

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21529]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118777]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21529]	Bacillus crassostreae strain JSM 100118 16S ribosomal RNA gene, partial sequence	HQ419276	1502	ENA	929098 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Metabacillus crassostreae DSM 24486	GCA_016908395	contig	GenBank	929098 tax ID	*
[Ref.: #66792]	Metabacillus crassostreae strain DSM 24486	929098.3	wgs	PATRIC	929098 tax ID	*
[Ref.: #66792]	Metabacillus crassostreae DSM 24486	2901121221	draft	JGI IMG/M	929098 tax ID	*

[Ref.: #21529]

GC-content

35.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Metabacillus crassostreae strain DSM 24486 PATRIC: 929098.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Metabacillus crassostreae strain DSM 24486 PATRIC: 929098.3
[Ref.: #69480]	motile	yes	90.87	no
[Ref.: #69480]	flagellated	yes	93.853	no
[Ref.: #69480]	gram-positive	yes	83.427	no
[Ref.: #69480]	anaerobic	no	97.729	no
[Ref.: #69480]	halophile	yes	56.141	no
[Ref.: #69480]	spore-forming	yes	96.423	no
[Ref.: #69480]	thermophile	no	99.521	yes
[Ref.: #69480]	glucose-util	yes	91.37	no
[Ref.: #69480]	aerobic	yes	82.683	no
[Ref.: #69480]	glucose-ferment	no	88.142	no

Availability in culture collections External links

[Ref.: #21529]

Culture collection no.

DSM 24486, CCTCC AB 2010452, CIP 110943, JCM 17523, JSM 100118

[Ref.: #88746]

SI-ID 397676

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Metabacillus bambusae sp. nov., isolated from bamboo grove soil.	Jeong JW, Kim YS, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.005279	2022	*
Phylogeny	Metabacillus sediminilitoris sp. nov., a marine bacterium isolated from a tidal sediment.	Mao H, Wei Y, Gao Y, Pei J, Zhang Y, Fang J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004392	2020	*
Phylogeny	Bacillus crassostreae sp. nov., isolated from an oyster (Crassostrea hongkongensis).	Chen JH, Tian XR, Ruan Y, Yang LL, He ZQ, Tang SK, Li WJ, Shi H, Chen YG	Int J Syst Evol Microbiol	10.1099/ijs.0.000139	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21529

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24486

#35296 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88746

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397676.1 )

#118777 Collection of Institut Pasteur ; Curators of the CIP; CIP 110943
* These data were automatically processed and therefore are not curated

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Metabacillus crassostreae strain DSM 24486

Metabacillus crassostreae strain DSM 24486

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