Marinobacterium mangrovicola (DSM 27697, CIP 110653, Gal22)

Name: Marinobacterium mangrovicola (DSM 27697, CIP 110653, Gal22)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130152

Type strain

Strain Designation Gal22

Culture col. no. DSM 27697 CIP 110653 Gal22

NCBI tax ID(s) 1476959

Special Collections DSMZ CIP

History DSMZ <- G. Alfaro, Jacobs University Bremen, Germany; Gal22 <- G. Alfaro and M. Ullrich CIP <- 2013, G. Alfaro-Espinoza, Jacobs Univ. Bremen, Bremen, Germany: strain Gal22

Links

Marinobacterium mangrovicola Gal22 is a Gram-negative, motile, rod-shaped bacterium that was isolated from mangrove root of Rhizophora mangle cultivated in an aquarium.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401026

DSM 27697,CIP 110653

@ref 20215

Last LPSN update 2026-05-29 08:37:18

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacterium

Species Marinobacterium mangrovicola

Full scientific name Marinobacterium mangrovicola Alfaro-Espinoza and Ullrich 2014

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439			90.743
125439	negative		99.429
125438			90.687
125438	negative		99.5
120775	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21646	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
120775	CIP Medium 13		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
21646	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.448
125439		99.925

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Environmental	#Aquatic	#Mangrove
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date	Host species
21646	mangrove root of Rhizophora mangle cultivated in an aquarium		Germany	DEU	Europe		Rhizophora mangle
120775	Food, Roots of Rhizophora mangle, cultivated in an aquarium in vitro mangrove ecosystem.	Aquarium containing R. mangle seedings located at Jacobs University Bremen, Germany	Germany	DEU	Europe	2010-09-01

Taxonmaps

69479

Global distribution of 16S sequence KJ021872 (>99% sequence identity) for Marinobacterium mangrovicola from Microbeatlas

Aquatic Samples	295
Soil Samples	5
Animal Samples	4
Plant Samples	1
Total Samples	305

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21646	1	Risk group (German classification)
120775	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM433959v1 assembly for Marinobacterium mangrovicola DSM 27697	scaffold	GCA_004339595	1476959.3	2734482069	1476959	71.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21646	Marinobacterium mangrovicola strain Gal22 16S ribosomal RNA gene, partial sequence	KJ021872	1508		1476959

GC content

@ref	GC-content (mol%)	Method
21646	57.0	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM433959v1 assembly for Marinobacterium mangrovicola DSM 27697
BV-BRC: 1476959.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	83.84	no
125439	motility	BacteriaNetⓘ	yes	90.74	no
125439	gram_stain	BacteriaNetⓘ	negative	99.43	no
125439	spore_formation	BacteriaNetⓘ	no	99.93	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacterium mangrovicola DSM 27697
NCBI: GCA_004339595.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	94.87	no
125438	aerobic	aerobicⓘ	yes	76.69	no
125438	spore-forming	spore-formingⓘ	no	90.45	no
125438	thermophilic	thermophileⓘ	no	98.97	yes
125438	flagellated	motile2+ⓘ	yes	90.69	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amplicon-based prediction of secondary metabolic potential of microbiomes facilitates natural product discovery.	Zhou ZY, Yin QJ, Basnet BB, Li ZY, Li G, Emam M, Wu QH, Wang H, Wei B.	Synth Syst Biotechnol	10.1016/j.synbio.2025.10.012	2026
	Genome taxonomy of the genus Neptuniibacter and proposal of Neptuniibacter victor sp. nov. isolated from sea cucumber larvae.	Kudo R, Yamano R, Yu J, Koike S, Haditomo AHC, de Freitas MAM, Tsuchiya J, Mino S, Thompson F, Romalde JL, Kasai H, Sakai Y, Sawabe T.	PLoS One	10.1371/journal.pone.0290060	2023
Phylogeny	Marinobacterium zhoushanense sp. nov., isolated from surface seawater.	Han SB, Wang RJ, Yu XY, Su Y, Sun C, Fu GY, Zhang CY, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001213	2016
Phylogeny	Marinobacterium mangrovicola sp. nov., a marine nitrogen-fixing bacterium isolated from mangrove roots of Rhizophora mangle.	Alfaro-Espinoza G, Ullrich MS	Int J Syst Evol Microbiol	10.1099/ijs.0.067462-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21646	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27697
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120775	Collection of Institut Pasteur ; Curators of the CIP; CIP 110653
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinobacterium mangrovicola (DSM 27697, CIP 110653, Gal22)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004339595

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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