Name: Alkalihalobacillus trypoxylicola SU1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1294

Type strain:

Species: Alkalihalobacillus trypoxylicola

Strain Designation: SU1

Culture col. no.: DSM 25300, KCTC 13244, NBRC 102646

Strain history: <- NBRC; NBRC 102646 <- M. Urai, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; SU1

NCBI tax ID(s): 1223507 (strain), 519424 (species)

SI-ID 400977

DSM 25300

Section

Alkalihalobacillus trypoxylicola SU1 is an aerobe, spore-forming, mesophilic bacterium that was isolated from larval guts of Japanese horned beetle Trypoxylus dichotomus septentrionalis.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Alkalihalobacillus*
	Species	**Alkalihalobacillus trypoxylicola**
	Full Scientific Name (LPSN)	Alkalihalobacillus trypoxylicola (Aizawa et al. 2010) Patel and Gupta 2020

Synonym

Bacillus trypoxylicola

Information on morphological and physiological properties Morphology

[Ref.: #29085]	Gram stain	positive

[Ref.: #29085]	Cell length	1.4 µm

[Ref.: #29085]	Cell width	0.6 µm

[Ref.: #29085]	Cell shape	rod-shaped

[Ref.: #29085]	Motility	no

[Ref.: #29085]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17990]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #17990]

Culture medium growth

[Ref.: #17990]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17990]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17990]	growth	30 °C
[Ref.: #29085]	growth	17-37 °C
[Ref.: #29085]	optimum	30 °C

[Ref.: #17990]	Temperature range	mesophilic
[Ref.: #29085]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29085]			optimum	9
[Ref.: #29085]			growth	08-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29085]

Oxygen tolerance

aerobe

[Ref.: #29085]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29085]		NaCl		growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29085]	cellobiose ChEBI	+	carbon source
[Ref.: #29085]	fructose ChEBI	+	carbon source
[Ref.: #29085]	galactose ChEBI	+	carbon source
[Ref.: #29085]	glucose ChEBI	+	carbon source
[Ref.: #29085]	glycerol ChEBI	+	carbon source
[Ref.: #29085]	glycogen ChEBI	+	carbon source
[Ref.: #29085]	lactose ChEBI	+	carbon source
[Ref.: #29085]	mannitol ChEBI	+	carbon source
[Ref.: #29085]	mannose ChEBI	+	carbon source
[Ref.: #29085]	melibiose ChEBI	+	carbon source
[Ref.: #29085]	raffinose ChEBI	+	carbon source
[Ref.: #29085]	rhamnose ChEBI	+	carbon source
[Ref.: #29085]	salicin ChEBI	+	carbon source
[Ref.: #29085]	sucrose ChEBI	+	carbon source
[Ref.: #29085]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29085]	acid phosphatase	+	3.1.3.2
[Ref.: #29085]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29085]	alpha-galactosidase	+	3.2.1.22

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17990]	Sample type/isolated from	larval guts of Japanese horned beetle Trypoxylus dichotomus septentrionalis
[Ref.: #17990]	Host species	Trypoxylus dichotomus septentrionalis
[Ref.: #17990]	Geographic location (country and/or sea, region)	Kanagawa
[Ref.: #17990]	Country	Japan
[Ref.: #17990]	Country ISO 3 Code	JPN
[Ref.: #17990]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17990]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17990]	Bacillus trypoxylicola gene for 16S ribosomal RNA, partial sequence, strain: SU1	AB434284	1509	ENA	519424 tax ID
[Ref.: #20218]	Bacillus trypoxylicola gene for 16S rRNA, partial sequence, strain: NBRC 102646	AB681895	1476	ENA	519424 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alkalihalobacillus trypoxylicola NBRC 102646	GCA_001592025	contig	GenBank	1223507 tax ID	*
[Ref.: #66792]	Alkalihalobacillus trypoxylicola KCTC 13244	GCA_001590785	scaffold	GenBank	519424 tax ID	*
[Ref.: #66792]	Bacillus trypoxylicola NBRC 102646	1223507.3	wgs	PATRIC	1223507 tax ID	*
[Ref.: #66792]	Bacillus trypoxylicola strain KCTC 13244	519424.4	wgs	PATRIC	519424 tax ID	*
[Ref.: #66792]	Bacillus trypoxylicola KCTC 13244	2724679199	draft	JGI IMG/M	519424 tax ID	*
[Ref.: #66792]	Bacillus trypoxylicola NBRC 102646	2731957677	draft	JGI IMG/M	1223507 tax ID	*

[Ref.: #17990]

GC-content

37.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus trypoxylicola NBRC 102646 PATRIC: 1223507.3
[Ref.: #69480]	motile	yes	89.087	yes
[Ref.: #69480]	gram-positive	yes	93.655	yes
[Ref.: #69480]	anaerobic	no	99.328	no
[Ref.: #69480]	aerobic	yes	84.074	no
[Ref.: #69480]	halophile	yes	83.312	no
[Ref.: #69480]	spore-forming	yes	95.649	yes
[Ref.: #69480]	glucose-util	yes	91.312	no
[Ref.: #69480]	flagellated	yes	76.577	yes
[Ref.: #69480]	thermophile	no	99.397	no
[Ref.: #69480]	glucose-ferment	no	91.493	no

Availability in culture collections External links

[Ref.: #17990]

Culture collection no.

DSM 25300, KCTC 13244, NBRC 102646

[Ref.: #70945]

SI-ID 400977

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus trypoxylicola sp. nov., xylanase-producing alkaliphilic bacteria isolated from the guts of Japanese horned beetle larvae (Trypoxylus dichotomus septentrionalis).	Aizawa T, Urai M, Iwabuchi N, Nakajima M, Sunairi M	Int J Syst Evol Microbiol	10.1099/ijs.0.005843-0	2009	*

References

#17990

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25300

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29085

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25514 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#70945

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400977.1 )

#25514

IJSEM 61 2010 ( DOI 10.1099/ijs.0.005843-0 , PubMed 19648346 )

* These data were automatically processed and therefore are not curated

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Bacillus trypoxylicola NBRC 102646

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