Pseudomonas savastanoi (DSM 19341, ATCC 13522, CFBP 1670)

Name: Pseudomonas savastanoi (DSM 19341, ATCC 13522, CFBP 1670)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12927

Type strain

Culture col. no. DSM 19341 ATCC 13522 CFBP 1670 ICMP 4352 LMG 2209 3 more

NCBI tax ID(s) 29438

Special Collections DSMZ CIP

Links

Pseudomonas savastanoi DSM 19341 is an obligate aerobe, mesophilic, Gram-negative plant pathogen that was isolated from Olea europaea.

Gram-negative motile rod-shaped obligate aerobe mesophilic plant pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 377522

LMG 2209,ATCC 13522,ICMP 4352,NCPPB 639,PDDCC 4352,CFBP 1670,CIP 103721,NCAIM B.01570,NCAIM B.01868,DSM 19341

@ref 20215

Last LPSN update 2025-12-16 09:49:58

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas savastanoi

Full scientific name Pseudomonas savastanoi (Janse 1982 ex Smith 1908) Gardan et al. 1992

Synonyms (1)

Pseudomonas syringae subsp. savastanoi

BacDive ID	Other strains from **Pseudomonas savastanoi** (8)	Type strain
12928	P. savastanoi PG2, DSM 50267, ATCC 19508, ATCC 8727, ATCC ...
12929	P. savastanoi 2076-31/2, DSM 50282, DSM 60282, NCPPB 1372
12930	P. savastanoi 2078-S22/2, DSM 50286, DSM 60298, NCPPB 1373
12931	P. savastanoi PP 6, DSM 50287, DSM 60303, NCPPB 380
12932	P. savastanoi 277, 64, DSM 50298, ATCC 13492, DSM 60228, ...
134749	P. savastanoi CDAO 682, CIP 59.13
157439	P. savastanoi IMI 379775
157440	P. savastanoi IMI 379776

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
122495	negative	rod-shaped
125439	negative		99.7
125438	negative		97.5

Pigmentation

@ref	Production	Name
122495		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8058	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39851	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
122495	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8058	positive	growth	28	mesophilic
39851	positive	growth	30	mesophilic
122495	positive	growth	30	mesophilic
122495	negative	growth	5
122495	negative	growth	41
122495	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
122495	obligate aerobe
125439	obligate aerobe	97.8

Spore formation

@ref	Spore formation	Confidence
125439		99.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
122495	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
122495	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
122495	17632 ChEBI	nitrate	-	reduction
122495	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
122495	16301 ChEBI	nitrite	-	reduction
122495	15882 ChEBI	phenol	-	degradation
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
122495	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
122495	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
122495	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122495	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
122495	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122495	caseinase	-	3.4.21.50
122495	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
122495	gelatinase	-
68369	gelatinase	-		from API 20NE
122495	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
122495	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
122495	ornithine decarboxylase	-	4.1.1.17
122495	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
122495	tween esterase	-
122495	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122495	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
8058	-	-	-	-	-	-	-	-	+	-	+	+	-	-	+	+	-	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Host species	Country	Continent
8058	Olea europaea	Olea europaea	Yugoslavia	Europe
122495	Food, Olea europea		Yugoslavia

Taxonmaps

69479

Global distribution of 16S sequence HM190226 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	346
Soil Samples	744
Animal Samples	234
Plant Samples	145
Total Samples	1469

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
8058		1	Risk group (German classification) According to TRBA 466
122495		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	PsvICMP4352 assembly for Pseudomonas savastanoi pv. savastanoi ICMP4352	scaffold	GCA_001401285	360920.13	2713896865	360920	11.87

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pseudomonas savastanoi pv. savastanoi culture-collection CFBP:1670 16S ribosomal RNA gene, partial sequence	HM190226	1444	360920
8058	Pseudomonas savastanoi gene for 16S rRNA, strain: ATCC 13522	AB021402	1502	29438
124043	Pseudomonas savastanoi pv. savastanoi partial 16S rRNA gene, strain NCPPB 639	LN849845	930	360920

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas savastanoi pv. savastanoi ICMP 4352
NCBI: GCA_001401285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.20	no
125439	motility	BacteriaNetⓘ	yes	85.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas savastanoi pv. savastanoi ICMP4352
NCBI: GCA_001401285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	no
125438	anaerobic	anaerobicⓘ	no	99.19	yes
125438	aerobic	aerobicⓘ	yes	89.89	yes
125438	spore-forming	spore-formingⓘ	no	79.21	no
125438	thermophilic	thermophileⓘ	no	97.97	yes
125438	flagellated	motile2+ⓘ	yes	87.23	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Host Range Determinants of Pseudomonas savastanoi Pathovars of Woody Hosts Revealed by Comparative Genomics and Cross-Pathogenicity Tests.	Moreno-Perez A, Pintado A, Murillo J, Caballo-Ponce E, Tegli S, Moretti C, Rodriguez-Palenzuela P, Ramos C.	Front Plant Sci	10.3389/fpls.2020.00973	2020
Enzymology	A new bacterial disease on Mandevilla sanderi, caused by Pseudomonas savastanoi: lessons learned for bacterial diversity studies.	Eltlbany N, Prokscha ZZ, Castaneda-Ojeda MP, Krogerrecklenfort E, Heuer H, Wohanka W, Ramos C, Smalla K.	Appl Environ Microbiol	10.1128/aem.02049-12	2012
	Global genomic analysis of Pseudomonas savastanoi pv. savastanoi plasmids.	Perez-Martinez I, Zhao Y, Murillo J, Sundin GW, Ramos C.	J Bacteriol	10.1128/jb.01067-07	2008
Enzymology	Detection of Pseudomonas savastanoi pv. savastanoi in olive plants by enrichment and PCR.	Penyalver R, Garcia A, Ferrer A, Bertolini E, Lopez MM.	Appl Environ Microbiol	10.1128/aem.66.6.2673-2677.2000	2000
	Allelic variation in the indoleacetic acid-lysine synthase gene of the bacterial pathogen Pseudomonas savastanoi and its role in auxin production.	Pintado A, Dominguez-Cervan H, Pastor V, Vincent M, Lee SG, Flors V, Ramos C.	Front Plant Sci	10.3389/fpls.2023.1176705	2023
	Complete genome assembly of the levan-positive strain PVFi1 of Pseudomonas savastanoi pv. savastanoi isolated from olive knots in Central Italy.	Turco S, Drais MI, Rossini L, Chaboteaux E, Rahi YJ, Balestra GM, Iacobellis NS, Mazzaglia A.	Environ Microbiol Rep	10.1111/1758-2229.13048	2022
	Suppression of Plant Immune Responses by the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 Type III Effector Tyrosine Phosphatases HopAO1 and HopAO2.	Castaneda-Ojeda MP, Moreno-Perez A, Ramos C, Lopez-Solanilla E.	Front Plant Sci	10.3389/fpls.2017.00680	2017
	Development of PCR and TaqMan PCR Assays to Detect Pseudomonas coronafaciens, a Causal Agent of Halo Blight of Oats.	An JH, Noh YH, Kim YE, Lee HI, Cha JS.	Plant Pathol J	10.5423/ppj.oa.09.2014.0096	2015
	Pseudomonas savastanoi pv. savastanoi contains two iaaL paralogs, one of which exhibits a variable number of a trinucleotide (TAC) tandem repeat.	Matas IM, Perez-Martinez I, Quesada JM, Rodriguez-Herva JJ, Penyalver R, Ramos C.	Appl Environ Microbiol	10.1128/aem.01572-08	2009

References

#8058	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19341
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39851	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122495	Collection of Institut Pasteur ; Curators of the CIP; CIP 103721
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas savastanoi (DSM 19341, ATCC 13522, CFBP 1670)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001401285

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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