Name: Pseudomonas oleovorans X-59
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12869

Type strain:

Species: Pseudomonas oleovorans

Strain Designation: X-59, X 59, 63

Culture col. no.: DSM 50188, ATCC 17440, ICPB 2750-63, IMET 11177, JCM 5968, NCIB 9946, NCTC 10860, BCRC 11902, CCM 3467, CCUG 51525, CCUG 726, CECT 318, CFBP 2435, CGMCC 1.1806, CIP 66.14, ICPB 3982, IFO 14167, LMG 1225, NBRC 14167, NCAIM B.01176, NCCB 76045, NCIMB 9946, NCPPB 1971, VKM B-1300, VTT E-012029

Strain history: CIP <- 1966, P. Thibault, Inst. Pasteur, Paris, France, Pseudomonas pseudoalcaligenes: strain X 59 <- Stanier, Inst. Pasteur, Paris, France: strain 63

NCBI tax ID(s): 301 (species)

SI-ID 13743

LMG 4224, ATCC 35149, CCM 5775, CCUG 12398, NCTC 8141, LMG 1225, ATCC 17440, CCUG 726, CECT 318, JCM 5968, NCIB 9946, NCPPB 1971, NCTC 10860, CIP 6614, IMET 11177, CCRC 11902, NCIMB 9946, IFO14167, CCM 3467, VKM B-1300, CIP 66.14, CFBP 2435, AS 1.1806, NBRC 14167, NCCB 76045, LMD 76.45, BCRC 11902, NCAIM B.01176, NCAIM B.02048, NCIM 2864, CCUG 51525, JCM 14074, CIP 66.16, CGMCC 1.1806, VTT E-012029, DSM 50188, DSM 21403

Other strains from Pseudomonas oleovorans

P. oleovorans CCUG 2087, IFO 13583, DSM 1045, ... (type strain)
P. oleovorans 3822, DSM 7521, ATCC 49536, CCUG ...
P. oleovorans STI09281(IMET), LA139, IFO 14914, ...
P. oleovorans 230G, DSM 28630
P. oleovorans CIP 55.111, ATCC 17663
P. oleovorans TF4-1L, CIP 105816, ATCC 29347
P. oleovorans CIP 60.76, ATCC 17443
P. oleovorans CIP 102546
P. oleovorans CIP 104355, ATCC 13474
P. oleovorans CCUG 15279
P. oleovorans CCUG 15284
P. oleovorans CCUG 15286
P. oleovorans CCUG 18891
P. oleovorans CCUG 48136
P. oleovorans CCUG 54654
P. oleovorans CCUG 61386
P. oleovorans IMI 349020
P. oleovorans JCM 13973
P. oleovorans JCM 13974
P. oleovorans JCM 13975
P. oleovorans JCM 13976
P. oleovorans JCM 13978
P. oleovorans JCM 13979
P. oleovorans JCM 13980
P. oleovorans JCM 13981
P. oleovorans JCM 13983
P. oleovorans JCM 20560, ATCC 12815, IAM 12410, ...

Section

Pseudomonas oleovorans X-59 is an obligate aerobe, mesophilic, motile human pathogen that was isolated from sinus discharge.

motile
human pathogen
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas oleovorans**
	Full Scientific Name (LPSN)	Pseudomonas oleovorans Lee and Chandler 1941 (Approved Lists 1980)

Synonym

Pseudomonas pseudoalcaligenes

Information on morphological and physiological properties Morphology

[Ref.: #121412]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #121412]	Cell shape	rod-shaped

[Ref.: #121412]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %99.181

Multimedia content

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #35012]

Culture medium

MEDIUM 3 - Columbia agar

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Culture medium growth

[Ref.: #35012]

Culture medium composition

expand / minimize

[Ref.: #121412]

Culture medium

CIP Medium 3

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 72

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #12673]	growth	30 °C
[Ref.: #35012]	growth	30 °C
[Ref.: #67770]	growth	26 °C

[Ref.: #12673]	Temperature range	mesophilic
[Ref.: #35012]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121412]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #121412]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #121412]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121412]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121412]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121412]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #121412]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #12673]	23038	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	+/-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121412]	13089	-	-	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12673]	Sample type/isolated from	sinus discharge

[Ref.: #67770]	Sample type/isolated from	Sinus drainage

[Ref.: #121412]	Sample type/isolated from	Human, Sinus drainage
[Ref.: #121412]	Country	France
[Ref.: #121412]	Country ISO 3 Code	FRA
[Ref.: #121412]	Continent	Europe
[Ref.: #121412]	Isolation date	1956
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Oral cavity and airways	#Airways
#Host Body Product	#Fluids	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC462171 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	2670
Soil Samples	769
Animal Samples	2451
Plant Samples	1575
Total Samples	7465

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12673]	Pathogenicity (human)	yes, in single cases
[Ref.: #12673]	Pathogenicity (plant)	yes
[Ref.: #12673]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121412]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas oleovorans subsp. oleovorans JCM 5968 gene for 16S ribosomal RNA, partial sequence	LC462171	1459	ENA	1218129 tax ID
[Ref.: #67770]	P.pseudoalcaligenes (strain LMG 1225T) 16S rRNA gene	Z76666	1492	ENA	301 tax ID
[Ref.: #20218]	Pseudomonas pseudoalcaligenes gene for 16S rRNA, strain: JCM 5968	AB021379	1511	ENA	330 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas oleovorans NCTC10860	GCA_900455635	contig	GenBank	301 tax ID	*
[Ref.: #66792]	Pseudomonas oleovorans NBRC 14167	GCA_002091775	contig	GenBank	1215116 tax ID	*
[Ref.: #66792]	Pseudomonas pseudoalcaligenes NBRC 14167 strain NBRC 14167	1215116.3	wgs	PATRIC	1215116 tax ID	*
[Ref.: #66792]	Pseudomonas pseudoalcaligenes strain NCTC10860	330.60	wgs	PATRIC	301 tax ID	*
[Ref.: #66792]	Pseudomonas pseudoalcaligenes NBRC 14167	2758568623	draft	JGI IMG/M	1215116 tax ID	*
[Ref.: #66792]	Pseudomonas oleovorans NCTC 10860	2917173859	draft	JGI IMG/M	301 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas pseudoalcaligenes strain NCTC10860 PATRIC: 330.60
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas pseudoalcaligenes NBRC 14167 strain NBRC 14167 PATRIC: 1215116.3
[Ref.: #69480]	motile	yes	88.225	no
[Ref.: #69480]	gram-positive	no	98.769	no
[Ref.: #69480]	anaerobic	no	97.646	no
[Ref.: #69480]	aerobic	yes	88.339	no
[Ref.: #69480]	halophile	no	81.862	no
[Ref.: #69480]	spore-forming	no	95.981	no
[Ref.: #69480]	thermophile	no	99.463	yes
[Ref.: #69480]	glucose-util	yes	82.215	no
[Ref.: #69480]	flagellated	yes	88.264	no
[Ref.: #69480]	glucose-ferment	no	91.413	yes

Availability in culture collections External links

[Ref.: #12673]

Culture collection no.

DSM 50188, ATCC 17440, ICPB 2750-63, IMET 11177, JCM 5968, NCIB 9946, NCTC 10860, BCRC 11902, CCM 3467, CCUG 51525, CCUG 726, CECT 318, CFBP 2435, CGMCC 1.1806, CIP 66.14, ICPB 3982, IFO 14167, LMG 1225, NBRC 14167, NCAIM B.01176, NCCB 76045, NCIMB 9946, NCPPB 1971, VKM B-1300, VTT E-012029

[Ref.: #82081]

SI-ID 13743

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas guguanensis sp. nov., a gammaproteobacterium isolated from a hot spring.	Liu YC, Young LS, Lin SY, Hameed A, Hsu YH, Lai WA, Shen FT, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.047712-0	2013	*
Phylogeny	Pseudomonas caeni sp. nov., a denitrifying bacterium isolated from the sludge of an anaerobic ammonium-oxidizing bioreactor.	Xiao YP, Hui W, Wang Q, Roh SW, Shi XQ, Shi JH, Quan ZX	Int J Syst Evol Microbiol	10.1099/ijs.0.005108-0	2009	*
Phylogeny	Pseudomonas tuomuerensis sp. nov., isolated from a bird's nest.	Xin YH, Zhang DC, Liu HC, Zhou HL, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijs.0.000547-0	2009	*
Metabolism	Control of the pyrimidine biosynthetic pathway in Pseudomonas pseudoalcaligenes.	West TP	Arch Microbiol	10.1007/BF00264376	1994	*
Metabolism	Pyrimidine base and ribonucleoside utilization by the Pseudomonas alcaligenes group.	West TP	Antonie Van Leeuwenhoek	10.1007/BF00583679	1991	*
Phylogeny	Pseudomonas oleovorans subsp. lubricantis subsp. nov., and reclassification of Pseudomonas pseudoalcaligenes ATCC 17440T as later synonym of Pseudomonas oleovorans ATCC 8062 T.	Saha R, Sproer C, Beck B, Bagley S	Curr Microbiol	10.1007/s00284-009-9540-6	2009	*

References

#12673

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 50188

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35012 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82081

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13743.1 )

#121412 Collection of Institut Pasteur ; Curators of the CIP; CIP 66.14
* These data were automatically processed and therefore are not curated

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Pseudomonas pseudoalcaligenes strain NCTC10860

Pseudomonas pseudoalcaligenes NBRC 14167 strain NBRC 14167

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