Name: Pseudomonas fluorescens 108
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12854

Type strain:

Species: Pseudomonas fluorescens

Strain Designation: 108, 52-22

Culture col. no.: DSM 50108, ATCC 17482, CIP 104377, ICPB 2927-108

Strain history: CIP <- 1995, DSM <- ICPB <- R.Y. Stanier: strain 108 <- W.R. Sistrom: strain 52-22

NCBI tax ID(s): 294 (species)

SI-ID 46548

ATCC 17482, IFO 15832, CIP 104377, DSM 50108, NCIMB 10459, NBRC 15832, ICMP 13619, CFBP 2125

Special Collections

DSMZ
CIP

Other strains from Pseudomonas fluorescens

Section

When using BacDive for research please cite our paper

Pseudomonas fluorescens 108 is an obligate aerobe, mesophilic, Gram-negative animal pathogen that was isolated from enrichment with naphthalene.

Gram-negative
motile
rod-shaped
animal pathogen
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas fluorescens**
	Full Scientific Name (LPSN)	Pseudomonas fluorescens Migula 1895 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #119410]	Gram stain	negative

[Ref.: #119410]	Cell shape	rod-shaped

[Ref.: #119410]	Motility	yes

[Ref.: #119410]	Pigment production	no
[Ref.: #119410]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12637]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #12637]

Culture medium growth

[Ref.: #12637]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12637]

Culture medium composition

expand / minimize

[Ref.: #35663]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35663]

Culture medium growth

[Ref.: #35663]

Culture medium composition

expand / minimize

[Ref.: #119410]

Culture medium

CIP Medium 3

[Ref.: #119410]

Culture medium growth

[Ref.: #119410]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #12637]		growth	30 °C
[Ref.: #35663]		growth	30 °C
[Ref.: #119410]		growth	5-30 °C
[Ref.: #119410]	negative	growth	41 °C
[Ref.: #119410]	negative	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119410]

Oxygen tolerance

obligate aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #119410]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #119410]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #119410]	nitrate ChEBI	+	reduction
[Ref.: #119410]	nitrate ChEBI	+	respiration
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #119410]	nitrite ChEBI	+	reduction
[Ref.: #119410]	phenol ChEBI	+	degradation
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119410]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #119410]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #119410]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #119410]	beta-galactosidase	-	3.2.1.23
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #119410]	caseinase	-	3.4.21.50
[Ref.: #119410]	catalase	+	1.11.1.6
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #119410]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #119410]	lecithinase	-
[Ref.: #119410]	lysine decarboxylase	-	4.1.1.18
[Ref.: #119410]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119410]	oxidase	+
[Ref.: #119410]	tween esterase	-
[Ref.: #119410]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #12637]	25713	+	-	-	-	-	-	-	-	+	+	+	+	+	-	+	+	-	+	+	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119410]	649	not determinedn.d.	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	+	+	+	-	-	+	-	-	-	+	-	-	+	+	-	-	-	-	+	+	+	+	+	+	+	+	-	-	-	+	-	+	+	+	-	-	-	-	+	-	-	+	+	-	+	+	+	-	+	+	+	+	-	-	-	+	+	+	+	+	+	+	+	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12637]	Sample type/isolated from	enrichment with naphthalene

[Ref.: #119410]	Sample type/isolated from	Isolated by naphthalene enrichment
* marker position based on {}

Isolation sources categories

#Engineered

#Laboratory

#Lab enrichment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF094728 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	976
Soil Samples	555
Animal Samples	2173
Plant Samples	1759
Total Samples	5463

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12637]	Pathogenicity (human)	yes, in single cases
[Ref.: #12637]	Pathogenicity (animal)	yes
[Ref.: #12637]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119410]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Pseudomonas fluorescens gene for 16S ribosomal RNA, partial sequence, strain: DSM 50108	D86002	1329	GenBank ENA	294 tax ID	*
[Ref.: #20218]	Pseudomonas fluorescens strain ATCC 17482 16S ribosomal RNA gene, partial sequence	AF094728	1490	GenBank ENA	294 tax ID	*
[Ref.: #124043]	Pseudomonas fluorescens partial 16S rRNA gene, strain DSM50108	LN849851	925	GenBank ENA	294 tax ID	*

Availability in culture collections External links

[Ref.: #12637]

Culture collection no.

DSM 50108, ATCC 17482, CIP 104377, ICPB 2927-108

[Ref.: #82066]

SI-ID 46548

References

#12637

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 50108

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35663 ; Curators of the CIP;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82066

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46548.1 )

#119410 Collection of Institut Pasteur ; Curators of the CIP; CIP 104377

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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